LOCUS AMU95901.1 485 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 amidophosphoribosyltran
sferase protein.
ACCESSION CP013342-2932
PROTEIN_ID AMU95901.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_14910"
/EC_number="2.4.2.14"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003051348.1"
/note="Catalyzes first step of the de novo purine
nucleotide biosynthetic pathway; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/transl_table=11
BEGIN
1 MLTTHPFDDD KLREECGVFG IHGAESAAAV AALGLHALQH RGQEAAGITA FDGKDFHTHR
61 AMGHVAGNFD RDDIIRQLAG ASAIGHVRYS TTGETALRNV QPLFADLATG GFAVAHNGNI
121 SNAMALRKIL VRRGSIFQST SDTEVIIHLV ATSNYRTLLD RFIDALKQVE GAYSLICLTA
181 EGMIGCRDPL GIRPLVIGKL GDAYILASET VALDVVGAEF VRSVDPGELV IIRDGQLSSH
241 RPFADRAARP CIFEYVYFSR PDSIVDGTSV YSVRKAIGAE LARENPVDAD LVIPVPDSGT
301 PAAIGYAQES GIPFELGIIR SHYVGRTFIQ PGDKVRHLGV KLKHNANRAL IAGKRIVLID
361 DSIVRGTTSL KIVQMMRDAG AAEVHMRIAS PPTSHSCFYG VDTPERAKLL AAQMTVGQMA
421 NFINADSLSF LTIDGLYRAL GEARRTDDCP QYCDACFTGD YPTTLTDFDE NSLEDQFSLL
481 AERVV
//