LOCUS       AMU95822.1               530 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis terrae subsp. terrae NBRC 15098 isocitrate
            lyase protein.
ACCESSION   CP013342-2853
PROTEIN_ID  AMU95822.1
SOURCE      Sphingopyxis terrae subsp. terrae NBRC 15098
  ORGANISM  Sphingopyxis terrae subsp. terrae NBRC 15098
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 3979087)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
            111660), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284143
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3979087)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 2.8
            Genome Coverage       :: 110x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:33:14
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 3,797
            CDS                          :: 3,699
            Pseudo Genes                 :: 49
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 45
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
                     /mol_type="genomic DNA"
                     /strain="203-1"
                     /sub_species="terrae"
                     /culture_collection="NBRC:15098"
                     /type_material="type strain of Sphingomonas terrae"
                     /db_xref="taxon:1219058"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="1974"
     protein         /locus_tag="AOA14_14505"
                     /EC_number="4.1.3.1"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_003044264.1"
                     /note="Catalyzes the first step in the glyoxalate cycle,
                     which converts lipids to carbohydrates; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MGYQEDMAQA GRLIRDYDGT WDGISGESVA RMRAQNKFRT GLDIARYTAR IMRADMAAYD
       61 ADPANYTQSL GCWHGFIAQQ KMISVKKHFG TTKGRYIYLS GWMIAALRSE FGPLPDQSMH
      121 EKTSVPALIE EIYTFLRQAD ARELGMLFRD LDAARAEGDE LKAKQVQAAI DNYETHVVPI
      181 IADIDAGFGN AEATYLLAKK MIEAGACALQ IENQVSDEKQ CGHQDGKVTV PHEDFIAKIR
      241 ACRYAFMELG VEDGIIVTRT DSLGAGLTKQ IAFSKEPGDL GDRYNSFLDC EEVEGAGNPG
      301 DVLINRDGKL MRPKRLPSNL YQFRPGTGED RCVMDCIASL QNGADLLWIE TEKPHIEQIA
      361 GMVDRIREVV PNAKLAYNNS PSFNWTLNFR QQVFDSWQAE GKDVSAYDRA KLMSADYDET
      421 ELSIEADNRI RTFQRDAAKR AGIFHHLITL PTYHTAALST DNLAKEYFGD EAMLGYVKGV
      481 QRKEIRQGIA CVKHQNMSGS DIGDDHKEYF AGEAALKAAG KDNTMNQFAA
//