LOCUS AMU95803.1 404 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 acetyl-CoA
acetyltransferase protein.
ACCESSION CP013342-2834
PROTEIN_ID AMU95803.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_14410"
/EC_number="2.3.1.9"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003044326.1"
/note="Catalyzes the synthesis of acetoacetyl coenzyme A
from two molecules of acetyl coenzyme A. It can also act
as a thiolase, catalyzing the reverse reaction and
generating two-carbon units from the four-carbon product
of fatty acid oxidation; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/transl_table=11
BEGIN
1 MTLRRAAIVA PIRTAVGKFG GSLSSMTAGA LGAVILKALM ERTKIDPARV DDVVFSQGYG
61 NGEAPAIGHW SWLAAGLPLD VPGYQLDRRC GSGLQAVVNA AMMVQTGMSD VVVAGGVESM
121 SNVEHYSTDI RKGVRAGNLT LHDRLTRGRL MSQPVERFGV ITGMIETAEN LAKDYDISRE
181 ACDAYAVRSH QRAAAAWANG LFDDELVPVS VPQKKGDPVV FAHDEGYRAD ATMETLGKLR
241 ALEGGVVTAG NASQQNDAAA ACLVVAEDKL DELGLTPIAW YHSSAAAGCD PSRMGIGPVP
301 AVERLFARNG LGWGDIDLVE LNEAFAPQVL AVLKGWGWSD DDSRNEILNV NGSGISLGHP
361 IGATGGRILA NLTRELVRRN GRYGLETMCI GGGQGIAAIF ERAA
//