LOCUS AMU95766.1 468 aa PRT BCT 21-JUN-2016 DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 histidine kinase protein. ACCESSION CP013342-2797 PROTEIN_ID AMU95766.1 SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098 ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098 Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis. REFERENCE 1 (bases 1 to 3979087) AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K., Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F. TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC 111660), a Polyethylene Glycol Degrader JOURNAL Genome Announc 4 (3) (2016) PUBMED 27284143 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3979087) AUTHORS Yoshiyuki,O. TITLE Direct Submission JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku University, Katahira 2-1-1, Sendai 980-8577, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Annotation was conducted using PGAP and MiGAP, and PGAP annotation was curated by referencing to the MiGAP annotation with the aid of annotation support tool of GenomeMatcher software. ##Genome-Assembly-Data-START## Assembly Method :: newbler v. 2.8 Genome Coverage :: 110x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/30/2015 14:33:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 3,797 CDS :: 3,699 Pseudo Genes :: 49 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098" /mol_type="genomic DNA" /strain="203-1" /sub_species="terrae" /culture_collection="NBRC:15098" /type_material="type strain of Sphingomonas terrae" /db_xref="taxon:1219058" /geo_loc_name="Japan: Kyoto" /collection_date="1974" protein /locus_tag="AOA14_14225" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_003044437.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MAEADAASPI EPGTGTRTEP AALASLTTGS LARRMIAIAA LWISVLLIGG GFALDRVLTG 61 AITRNFDSSL EYVLIAMIRS SEIGPDGEVR LIEPLGDQRF LEPYSGLYWQ ISGGGQEPYR 121 SRSLWERTLK SPKPHVDTGL HTYDSTQFPD EQLRILERNV ILPGSKTNWR FQIAQSRQAL 181 DEQIRAVRAT LIPSLGLLGV GLIVLAALQT FYGLWPLRHI RRAIAAMRGG ENRRVIAPLP 241 LEVQPMVEEL NALLAHNEKQ AEEARLHAGN LAHALKTPLT VLLNSAAGSD SELAETIRRE 301 AATMRRQVDH HLARARAVGR RGAAQARAVV WDSVDSVLRA LTRLHPDVRF DEAGDKTLVA 361 RVERQDLDEL IGNLLENAAK YGGGSVFVTV QRAGGMAEIL IEDDGPGISP ADRQRIFDRG 421 VRLDSGKPGT GLGLAIVRDV AEIYGGSVAL EESEDLGGTL VRLKLPAG //