LOCUS       AMU95739.1               835 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis terrae subsp. terrae NBRC 15098 ATP-dependent
            DNA ligase protein.
ACCESSION   CP013342-2770
PROTEIN_ID  AMU95739.1
SOURCE      Sphingopyxis terrae subsp. terrae NBRC 15098
  ORGANISM  Sphingopyxis terrae subsp. terrae NBRC 15098
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 3979087)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
            111660), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284143
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3979087)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 2.8
            Genome Coverage       :: 110x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:33:14
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 3,797
            CDS                          :: 3,699
            Pseudo Genes                 :: 49
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 45
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
                     /mol_type="genomic DNA"
                     /strain="203-1"
                     /sub_species="terrae"
                     /culture_collection="NBRC:15098"
                     /type_material="type strain of Sphingomonas terrae"
                     /db_xref="taxon:1219058"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="1974"
     protein         /locus_tag="AOA14_14085"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_003044501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MTRADPLAQY NKKRDFKLTP EPAGKVAKGG GNRFIVQKHD ATRLHYDFRL EVDGVLKSWA
       61 VTKGPSANPD DKRLAVRTED HPMAYADFEG VIPKGEYGGG SVMLWDRGTW APVAGKSAKD
      121 LEKGHLHFTL DGERMKGEWL LVRMKPRAGE KRENWLLRKI DDAYAGGSDD LTGRYLTSVL
      181 TDRPMAEIAG DEDGEQSLKG AKGEAFAKKM AAAAAHNRKV AKGSKAGAKP PKFRKLQLAT
      241 LVDSVPAGNN WFYEIKFDGY RALVAAAGDQ VVVYTRSGLD WTDKFAPLAR HIAALDLPPC
      301 LIDGEIVAYG KDGNPDFSSL QAVLKRGHGA QDEATDLHFF AFDLLEENGK SLTALGNLER
      361 KERLEALLRD AAPPIAVADH VIGAGEKLYE AMCGAGQEGI IAKRADAPYA GRRSKNWVKV
      421 KCTRRQEFII VGWKESSAKA RPFGSLLLAQ REKGELVYKG NVGTGFDADT MAMLAAKFAG
      481 RARKTAPVDV DKAAARKVHW VRPDLVAEIA FAEYTASGSV RHASFVGLRA DKEAKDVKPE
      541 TKAKAPSPVS DVKISSRDRV IFPEAKATKG DLADYYAAVA PVMLPHLARR PASLVRCPQG
      601 RAKQCFFQKH DSGSFGPHVH HVPIEEKDGG VEDYLYVEDA DGILACVQMG TIEFHGWGSH
      661 VDTLEQPDRM VFDLDPDEGL DFADVKKAAA DLKRQLADIG LVSFAMLSGG KGVHVVVPLD
      721 PGHSWDAHKD FAKRFAEAMS LAEPDRFVAT MSKAKRKGKI FIDWLRNQRG STAIMPYSAR
      781 ARAGAPVAVP IDWDGLAAID SARHWTIADA RALLDRAASP TLKGWGFARQ TLPAI
//