LOCUS AMU95636.1 647 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 asparagine
synthetase B protein.
ACCESSION CP013342-2667
PROTEIN_ID AMU95636.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_13560"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003044758.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MCGFAGFLDR GGFADGEAVL RRMADTIAHR GPDSDGYWVD GEAGIALAHR RLAIIDLSPA
61 GHQPMASHDG RYVLSYNGEI YNHLDLRREL EAAGPIAWRG HSDTETLLQG FSKWGVVGTL
121 ERANGMFALA LWDRGERKLF LARDRMGEKP LYYGLQGGTL LFGSELKALR QHPAWQGEVD
181 RDVLTLFLRH NYVPGPYSIY RGIAKLPPAH YLEIGLDDDQ LPDPVAFWDI AEKAQNGRAQ
241 PFAGAPDAAV DALEDLLLDA VGMRMAADVP LGAFLSGGYD SSTVVALMQR QSARPVKTFS
301 IGFSEEEYDE AHHAKRVAAH LGTDHTELYV TPQDALDQIP ILPHHWDEPF ADSSQMPTLL
361 VSRLARSEVT VSLSGDGGDE LFCGYTRYTQ GYDIWRRLGR MPRAVRKLAA GALRLTPADL
421 IDGTMKMAPA RLRKMAVGDR LLKVADILDV EQAEDFYRSL VSHSKDPAAL VPGAHEPPTI
481 LTTPDHDWPA QGDFRDRMMY LDMRSYLPDD ILVKLDRASM AVSLESRVPL LDHRVVEFAL
541 SLPLKYKLRG GEAKWSLRQL LYRYVPREMM ERPKMGFGVP IEHWLRGPLR SWADDMLAPD
601 RLKREGYFNA DAIGRLWSDT RSGRRRMHYY VWDILMFQAW LDAQSTA
//