LOCUS AMU95626.1 655 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 hypothetical
protein protein.
ACCESSION CP013342-2657
PROTEIN_ID AMU95626.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_13510"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_018251345.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 METDVEGARE KTISNEIAFF NTQYSLLESR SLAARTVRAG NLLNDKDFLA QYDLTGGEEG
61 TPNSAQRARM AERAEKILLD AVSIEPVRQS SLVDVSFSTP SATLSAKLTN LWVQQFVAAN
121 LDRRFSATSD ARRFLEQRIG SLRRNLEDSE RELITYAANN DIITLETRSD PGTGRTIGDR
181 TLVAADVEKI STALSVARDA RIAAESQLSS SVSSTDLSSN AAVSALRQRR AELMADLARL
241 RKIFGEEYPE IVAKKEQLAA LNQSVSTETQ RSRALNQESY ASALKREKEL QAELDRLTGK
301 YRDQQRRSIE YAILQREVDT NRQLYDGLLQ RYKEIGAAGV GTNNIAVVDT ATPSPGPSSP
361 KLILNVALAL IAGFGLAGAL VFLLEQLDQS IRDPSEVSDR FGLPLLGSIP KVDADTFEEL
421 LLDKKSMIYE AYFAAQTNLT FLTNHGAPRS FMLTSTRPAE GKSSSALSLA SVFGQTGKKV
481 MLIDADIRSP SLNELLDVDN RNGLSNYLTG FDKVSELIAS SPEFGFDYIL AGPMPPNAAE
541 LFSSSRLSEL VELLLRDYDH VILDAPPVLG LADAPLLARP VEGVIFTIDA SSSSARAIKS
601 ALNRLRQTDA QIFGALVTKV GRRNEIYGYG YGYGYGYGYG YGYGYGADKS RGNSE
//