LOCUS       AMU95573.1               458 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis terrae subsp. terrae NBRC 15098 pyruvate
            dehydrogenase protein.
ACCESSION   CP013342-2604
PROTEIN_ID  AMU95573.1
SOURCE      Sphingopyxis terrae subsp. terrae NBRC 15098
  ORGANISM  Sphingopyxis terrae subsp. terrae NBRC 15098
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 3979087)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
            111660), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284143
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3979087)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 2.8
            Genome Coverage       :: 110x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:33:14
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 3,797
            CDS                          :: 3,699
            Pseudo Genes                 :: 49
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 45
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
                     /mol_type="genomic DNA"
                     /strain="203-1"
                     /sub_species="terrae"
                     /culture_collection="NBRC:15098"
                     /type_material="type strain of Sphingomonas terrae"
                     /db_xref="taxon:1219058"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="1974"
     protein         /locus_tag="AOA14_13235"
                     /EC_number="1.2.4.1"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_003039104.1"
                     /note="catalyzes the oxidative decarboxylation of pyruvate
                     with concomitant acetylation of a lipoic acid-containing
                     dihydrolipoamide acetyltransferase within the complex. The
                     E1 component of the pyruvate dehydrogenase complex
                     catalyzes the overall conversion of pyruvate to acetyl-CoA
                     and CO(2). It contains multiple copies of three enzymatic
                     components: pyruvate dehydrogenase (E1), dihydrolipoamide
                     acetyltransferase(E2) and lipoamide dehydrogenase; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MAIELKMPAL SPTMEEGTLA KWLVKEGDAV KSGDILAEIE TDKATMEFEA IDEGTIAQIL
       61 VPEGTDNVKV GTVIATISGE GEEATPAPAP APAAAPAPAE APAPAATPAP AAEKPAPAVR
      121 AADPSIPAGT AMVKLTVREA LRDAMAEEMR ADDRIFVMGE EVAEYQGAYK VTQGLLDEFG
      181 PRRVIDTPIT EYGFAGLGAG AAMGGLKPVI EFMTFNFAMQ AIDHIINSAA KTNYMSGGQM
      241 RCPIVFRGPN GAASRVGAQH SQNYAPWYAS VPGLIVISPY DAADAKGLLK AAIRSEDPVV
      301 FLENELLYGR SFELPDVEDY VLPIGKARIM REGSDVTIVS YSIGVGLALE AADALAGEGI
      361 EAEVIDLRTL RPLDTETVLA SLKKTNRMIV VEEGWPTCSI ASELAMVAME QGFDDLDAPV
      421 LRVTDEDVPL PYAANLEKAA LVDVPRVIAA AKTVCNRG
//