LOCUS       AMU95559.1              1426 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis terrae subsp. terrae NBRC 15098 DNA-directed
            RNA polymerase subunit beta' protein.
ACCESSION   CP013342-2590
PROTEIN_ID  AMU95559.1
SOURCE      Sphingopyxis terrae subsp. terrae NBRC 15098
  ORGANISM  Sphingopyxis terrae subsp. terrae NBRC 15098
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 3979087)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
            111660), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284143
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3979087)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 2.8
            Genome Coverage       :: 110x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:33:14
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 3,797
            CDS                          :: 3,699
            Pseudo Genes                 :: 49
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 45
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
                     /mol_type="genomic DNA"
                     /strain="203-1"
                     /sub_species="terrae"
                     /culture_collection="NBRC:15098"
                     /type_material="type strain of Sphingomonas terrae"
                     /db_xref="taxon:1219058"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="1974"
     protein         /locus_tag="AOA14_13165"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_003039143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MNQITNFMNP VAKPETFDMI KIGIASPERI RSWSFGEIKK PETINYRTFK PERDGLFCAR
       61 IFGPIKDYEC LCGKYKRMKY KGIVCEKCGV EVTVTKVRRE RMGHIELAAP VAHIWFLKSL
      121 PSRIGLLLDM QLKQLERVLY FEAYIVLEPG LTPLEKFQLL TEDELLDAQD EYGEDAFSAG
      181 IGAEAIRVLL EGLDLEQERV DLMEELATTK SELKPKKIIK RLKVVESFIE SGNRPEWMIL
      241 EVIPVIPPEL RPLVPLDGGR FATSDLNDLY RRVINRNNRL KRLMELRAPD IIVRNEKRML
      301 QEAVDALFDN GRRGRTITGA NKRPLKSLSD MLKGKQGRFR QNLLGKRVDY SGRSVIVTGP
      361 ELKLHQCGLP KKMALELFKP FIYARLDAKG LSMTLKQAKK WVEKERKEVW DILDEVIREH
      421 PVLLNRAPTL HRLGIQAFEP VLIEGKAIQL HPLVCAAFNA DFDGDQMAVH VPLSLEAQLE
      481 ARVLMMSTNN ILSPANGKPI IVPSQDMVLG LYYLSMEREG EPGEGMLLAD MAEVHQALYT
      541 GAVTLHSKIT SRVPQTDEAG NEYLRRFETT PGRMLIGECL PKSHTVPFDV VNRLLTKKEI
      601 GDVIDQVYRH TGQKETVLFA DAIMALGFRH AFRAGISFGK DDMIIPDAKE KLVDETRALV
      661 KDFEQQYQDG LITQQEKYNK AIDAWSQCGD KVANAMMDEI RATPKLDDGR LAPVNSIYMM
      721 AHSGARGSPA QMKQLAGMRG LMAKPSGEII ETPIISNFKE GLTVLEYFNS THGARKGLAD
      781 TALKTANSGY LTRRLVDVSQ DCVVIEDDCG TTRGMEMRAI IQGGSTIASL GERILGRTTL
      841 EDVVDKDGNV IAPVGTLLDE PTVAKIEEAE VQAVKIRSPL VCEASLGVCA KCYGRDLARG
      901 TPVNIGEAVG VIAAQSIGEP GTQLTMRTFH IGGAAQVNEQ SNLEAISDGT IEYRDMETIV
      961 DQRGRRLALS RSGEIAVIDS EGRERATHKL PYGAQIMHKN GEKVKKGDRI AEWDPFTMPL
     1021 ITEKNGIVKY QDLVDAKTLT EQVDEATGIA QRVVIEYRTT GRGKKEDLQP RLTLLDDASG
     1081 EAARYLLAVG TMISVEDGQE VKAGDVLARV TREASKTRDI TGGLPRVAEL FEARIPKDNA
     1141 VIAKLSGRIE FVKDYKAKRK IAIVPEEGDA VEYLIPKSKV LEVQEGDYVK RGDALISGSP
     1201 NPHDILDVMG VEALAEFLVA EIQEVYRLQG VKINDKHIEV IVRQMLQKVE ITDGGDTTLL
     1261 PGEQLDYLEM MEYNAKLPKN GKPAEGRPVL LGITKASLQT RSFVSAASFQ ETTRVLTEAS
     1321 VQGKVDSLMG LKENVIVGRL IPAGTGAAMN RIRVTASSKD AALRAAMRAA NEAHLIAPQT
     1381 AAEEHAAELA QGPEAAMGDD PLGAVEGETH GTDADAGDYL IQSDED
//