LOCUS       AMU95558.1              1392 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis terrae subsp. terrae NBRC 15098 DNA-directed
            RNA polymerase subunit beta protein.
ACCESSION   CP013342-2589
PROTEIN_ID  AMU95558.1
SOURCE      Sphingopyxis terrae subsp. terrae NBRC 15098
  ORGANISM  Sphingopyxis terrae subsp. terrae NBRC 15098
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 3979087)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
            111660), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284143
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3979087)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 2.8
            Genome Coverage       :: 110x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:33:14
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 3,797
            CDS                          :: 3,699
            Pseudo Genes                 :: 49
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 45
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
                     /mol_type="genomic DNA"
                     /strain="203-1"
                     /sub_species="terrae"
                     /culture_collection="NBRC:15098"
                     /type_material="type strain of Sphingomonas terrae"
                     /db_xref="taxon:1219058"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="1974"
     protein         /locus_tag="AOA14_13160"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_003039146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MATKAKSVGK ALEATATKRI RKLFGNIHEA VEMPNLIEVQ RESYEQFLRS DPSVGYVSGL
       61 EKTLRSVFPI RDFAGTAELD FVHYELEEPK YDVEECRQRG ITYAAPMKVT LRLIVFEVDS
      121 ETDTRSVLDI KEQDVYMGDM PLMTENGTFF INGTERVIVS QMHRSPGVLF DHDRGKTHSS
      181 GKYLFAARVI PYRGSWLDFE FDAKDIVNVR IDRKRKLPVT SLLYALGMSG EEILNFFYDR
      241 MIFERAADGW KIPFVLENWR GAKPAFDIVD AKTGEVVFAA GHKISPRLAN KAAKDGLETL
      301 LIPTEEIFGR YSAYDLINES TGEIYIEAGD EVTAENLEKM DAAGIDKLVL LDIDHNNTGP
      361 WIRNTLKADK AEDRDQALSD IYRVMRPGEP PTRETADALF AGLFFDPERY DLSAVGRVKL
      421 NMRLGLDAED TVTTLRSEDI LAVVKELVNL KDGKGEIDDI DNLGNRRVRS VGELLENQYR
      481 VGLLRMERAV KERMSSVDVS TVMPNDLINA KPAVAAVREF FGSSQLSQFM DQTNPLSEVT
      541 HKRRVSALGP GGLTRERAGF EVRDVHPTHY GRICPIETPE GPNIGLINSL ATFARVNKYG
      601 FIETPYRRVV DGKVTSEVVY LSAMEESKHT VAQANADLNP DGSFVEELIS AREAGEFLMA
      661 PREQITLMDV SPKQLVSVAA SLIPFLENDD ANRALMGSNM QRQAVPLLRA EAPVVGTGME
      721 GTVARDSGAA IAARRGGIID QVDATRIVIR ATDLVEPGKS GVDIYRLQKF QRSNQNTCIN
      781 QRPLVKVGDV IRTGDIIADG PSTELGELAL GKNVLVAFMP WNGYNYEDSI LISERIVKDD
      841 VFTSIHIEEF EVTARDTRLG PEDITRDIPN VGEEALRNLD EAGIVYIGAE VGPGDILVGK
      901 ITPKGESPMT PEEKLLRAIF GEKASDVRDT SLRLPPGVSG TVVEVRVFNR HGIDKDERAI
      961 AIEREEIERL KQDADDERAI LNRATFSSLK ELLVGQATSA VPKGMKKGDV LTEDQLAELD
     1021 RGDWWKLAVV DDKAQAALEA IKAQYDDAIK RINAKYEDRV EKLQRGDELA PGVLKMVKVF
     1081 VAIKRKLQSG DKMAGRHGNK GIISRILPIE DMPFLEDGTH VDVVLNPLGV PSRMNVGQIL
     1141 ETHLGWASRG FGRQITAALE DWRAANPNPE AGAPPEAVRE ALLTAYGDDY ADDIKGRSND
     1201 QIVEMAGHLS LGIPFATPVF DGAREGDVST MLERAGLDRS GQVDLYDGRT GDRFDRKVTV
     1261 GYMYILKLHH LVDDKIHARS IGPYSLVTQQ PLGGKAQFGG QRFGEMEVWA LQAYGAAYTL
     1321 QEMLTVKSDD VIGRTKVYEA IVKGDDTFEA GIPESFNVLV KEMRSLGLNV ELSSYTDEDD
     1381 KDGPDALPEA AE
//