LOCUS AMU95497.1 750 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 nitric oxide
reductase large subunit protein.
ACCESSION CP013342-2528
PROTEIN_ID AMU95497.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_12845"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003039373.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MGEYRKLWWT LIAVLTVTFA ILGVAGAEVY RKAPPIPAKV VSASGALLMT HDDIMAGQAA
61 WQSTGGMQLG SIWGHGAYQA PDWSADWLHR ELTAWLSLAA EDGYGKPFDD LAVEQKAALT
121 YQLKQEYRHN ALDPATGVVT VSDRRARALA IVAAHYDALY GTDPALREMR DNYAMKEDTL
181 PSAEKRQKLA DFFFWTAWAA STERPGTVAT YTNNWPPEPL IGNQPTPENI LWSLACVVIL
241 IAGVGSLIWG WAFLRRHEDT PLAPADKDPL TLAALTPSQR ALGKYLFVVA ALFIFQVFIG
301 GFTAHYTIEG QSFYGIDVSQ WFPYALTRTW HVQSAVLWIA TAFLAAGLFL APVVHGGDPK
361 HQKLGVDLLF WALILVVAGS FAGNYLAIAH AMPERLSFWL GHQGYEFLDL GRVWQIALFA
421 GLLFWLVLML RGMMPALRRE KEGDRSLLLL LTVSTVAIGL FYGSGLFYGE RTHITIMEYW
481 RWWVVHLWVE GIFEVFATAA IAFIFASMGL VSKRIATAAS LASASLFMVG GVPGTFHHLY
541 FSGTTTPVMA VGAAFSALEV VPLIVLGYEA WEHWSLRDRA PWMRSLRWPL ICFVAVAFWN
601 MLGAGVFGFM INTPVALFYL QGLNTTAVHA HAALFGVYGF LALGFTLLVL RYIRPEIAFN
661 ERLMRTGFWG LNAGLVLMIF TSLLPVGLFQ FEASVTTGMW YARSDTFLQQ GFLETLRWVR
721 TFGDVVFIVG AVAIAWQVVI LGLWRKGARA
//