LOCUS AMU95303.1 550 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 acetolactate
synthase protein.
ACCESSION CP013342-2334
PROTEIN_ID AMU95303.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_11870"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003048990.1"
/note="catalyzes the condensation of two pyruvates to form
acetolactate, implicated in pH homeostasis via the
acetoin-2,3-butanediol pathway or in valine biosynthesis;
Derived by automated computational analysis using gene
prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MTVKKASDLF IECLEEEGVE YIFGVPGEEN LDFLDSLSRS KKIKLILTRH EQGAGFMAAT
61 YGRHTGKTGV CLATLGPGAT NFVTAAAYAQ LGGMPMMMIT GQKPIKKSKQ GRFQILDVVA
121 MMGPITKYTH QMASSDNIPS RVREAFRLAE EEKPGAVHIE LPEDIADEHT ESLPLKRSHS
181 RRPTADVKSI REAVKALESA KAPVLVIGAG ANRTMTSRML LQFIEKTGIP FLTTQLGKGV
241 IDERHPKFLG CAALSSGDFV HRAVEASDCI VNIGHDVIEK PPFFMQRGGP TVIHVSTKTA
301 EVDPVYFPGI EVIGDIANAI WQMKEDIVPN GGWSFDHMLA YRKAEVEHTA PLAADTRFPI
361 FPPHLVQQVR DAMPDDGIIC LDNGVYKIWF ARGYTAYRPN TVLLDNALAT MGAGLPSAMM
421 SAMVYPDRKV MAICGDGGFM MNSQEMETAV RLGLNLTVLI LNDSSYGMIR WKQANMGFKD
481 WGLTYGNPDF VKYAESYGAH GHRVESAAHL KELLAHTRDT PGVHLIDCPV DYSENDQILN
541 IDIKKLSKEL
//