LOCUS AMU95269.1 393 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 phosphoribosylglycinami
de formyltransferase protein.
ACCESSION CP013342-2298
PROTEIN_ID AMU95269.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /gene="purT"
/locus_tag="AOA14_11690"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003048972.1"
/note="non-folate utilizing enzyme, catalyzes the
production of beta-formyl glycinamide ribonucleotide from
formate, ATP, and beta-GAR and a side reaction producing
acetyl phosphate and ADP from acetate and ATP; involved in
de novo purine biosynthesis; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/transl_table=11
BEGIN
1 MTPTAKILLL GSGELGREFV ISAKRLGCHV IACDSYAGAP AMQVADEAEV FSMLDGDALR
61 AAIEKHRPDH VVPEIEAIRT EVLAELEAEG FHIVPSARAA QLTMNRDAIR DLAASELGLT
121 TSTFEYATSR EELAAAAARI GFPLVVKPVM SSSGKGQSTV KDAAGIDAAW DYAAAGMRGD
181 RLRVIAEAFI DFDYEITLLT VRHKDGVAFC PPIGHRQERG DYRESWQPAA MSAAALQAAQ
241 AMATKVVDAL GGHGIFGVEF FVKGDDVIFS ELSPRPHDTG MVTLISQQYS EFDLHARAIL
301 GLPIPPVDVP QASASAVLLA DRDASDFAIT GLAEALTPPN AETSVDARLF GKPVTRPYRR
361 MGVALAKVAG GTTDDARAAA VAAADRLAIR YPG
//