LOCUS AMU95249.1 537 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 amidase protein.
ACCESSION CP013342-2278
PROTEIN_ID AMU95249.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_11590"
/EC_number="3.5.1.4"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003048939.1"
/note="catalyzes the hydrolysis of a monocarboxylic acid
amid to form a monocarboxylate and ammonia; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/transl_table=11
BEGIN
1 MALAIAVTAA SIRAMQKISL LTAALLASVP AAAMPPPLPD VAGKDAATLQ AEMTAGETSS
61 EVITAAYLER IRNIDKAGPT LNAVIAVFPG AMSEAYRLDQ ERKAGHVRGP LHGIPVLLKD
121 NIEAAGPVAT TAGSLALKGN ITGRDAPLVA RLREGGAVIL GKTNLSEWAN IRSNDATSGW
181 SAVGGLTRNP HALDRNTCGS SAGSGAATAA SLAPLTIGTE TDGSITCPAG MNGVVGFKPT
241 VGLVSRSLVV PISHSQDTAG PMTLTVRDAA TLLSVLAGSD PADPATAEAD AHRRDFAAAL
301 SPDALRGKTV GVLRDRIGGR ADIGALFDAA LDTMRAAGAT IVEIKDSRSG LDGLGDAEFE
361 ILMTELKADM AAYLAGLPGK GAPRSLADLI AFNKATPAEM RWFDQALFEL AESKGGLDSE
421 LYRDAKAKTA RLAGPDGIDR LLRESGADLL VGVTNGPAWT TDLVNGDHYT GPGVSQLPAV
481 AGYPHLTVPM GAVEGLPIGL SFIGPKWSDG DILAAGYAYE QASRKRVAPT YRASVTP
//