LOCUS       AMU95180.1              1989 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis terrae subsp. terrae NBRC 15098 hypothetical
            protein protein.
ACCESSION   CP013342-2209
PROTEIN_ID  AMU95180.1
SOURCE      Sphingopyxis terrae subsp. terrae NBRC 15098
  ORGANISM  Sphingopyxis terrae subsp. terrae NBRC 15098
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 3979087)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
            111660), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284143
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3979087)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 2.8
            Genome Coverage       :: 110x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:33:14
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 3,797
            CDS                          :: 3,699
            Pseudo Genes                 :: 49
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 45
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
                     /mol_type="genomic DNA"
                     /strain="203-1"
                     /sub_species="terrae"
                     /culture_collection="NBRC:15098"
                     /type_material="type strain of Sphingomonas terrae"
                     /db_xref="taxon:1219058"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="1974"
     protein         /locus_tag="AOA14_11240"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /transl_table=11
BEGIN
        1 MTSKGAISGP GTIGIAPLGG QGDGVINFGN VGSIGAVDKA GAVTDSVGVA LNGSSAKADN
       61 TLTATNSGLI TGGFSATGFG GTVSLDNSGT IYNGVTLMGA GDVSLTSAGA VRSGNVNVQS
      121 TVAQATTKAG DTTTDVYTSG DVKGVIGDVA SADGKTKGSA VFVGPVGNVD VTAKGVAGTV
      181 TGYTVGSSVT VVNTAAIPLA DKSVVTSETS ATYEAGTVKI ATAATSKLDA VNGVANGNVD
      241 ITVAGTVENG VNAVPVFNVN STSKTVQTRD SKNAVDLERI DSFTREAVAG DSTIRIAETG
      301 VVGGAFAQAT RDASISHAGE VKGALNAIGG AGATTDSGST TTTRNDTGNL LKIVTANNSA
      361 SAVGKATIEI AEGASVGGGV SATATSDASV INAGAVDGAV TARAGNGGAS SFDQTLIYDG
      421 KGGLLGNTTK TTSGPAAGNA SVVVAETGSI GGNALATATN NASADNAGAI DGNLTATAGN
      481 GNANATSQAL VFDSTGALLL SDVYETSDTR SKGNASAVNA ATGKVGGSVN ANATQDISIA
      541 NAGTVGGGVN GNSSGSDSTY SRTILTPAPV VDATAGTTTT KYSFADESAN TSTTGKVGFT
      601 NAAGGVIGFN GVGNVNLTAG GDITILNQGE VRGTTYAASS SSKSANASSY NSTEVLDGKG
      661 GRSFTEDRTS KGSSTATGGN VAGTYAGANG TKNFVPGANG TITQIADLAS TATVTGAVFG
      721 NVNSYAGNSG VAGSSFANSS SETTVLDVDG TGTFSGKYAE SSETTAISGG DSKVTIAGRV
      781 ATGNAGGGGF VYSQGTNSSS VVVSDSVEQG VTSNAFGASA GKAEEAGSIA QTVTKGTYVT
      841 DELIVKSSSA SVVSDGASSA SITGKATASQ DTVGGSVTIN GVKSASADVA AKAIVGGDLT
      901 VSANNGTDFA STTEQSYVRD AKTGVATASE IISSTSGAAA AQGNAQATIA GTVEGGTYVA
      961 AGRGDAKVTL TGVSEDYVSA VASGSVTKTT VEREWTGKTK SGSADFGTLV SSLTGRTLGE
     1021 SVITETTVVG GKASIVIDSA QALKDKAIAA TEGNAFAYGV GGASISVTKG SIVGGDASAI
     1081 SYATNNVTTA TTTNDGKGTV TQTASSTNTI VGGPASVVND GQVKGNVLAD SATSATVSNS
     1141 GKIAGSATAR SIVTATDSSS VTTDVGKASL QTITETFTPV VALGKASVTN AAGAVIGGDI
     1201 NVAAGEGAVT NNGIVGGTTV LGQNIDTASR TEVRTDTSTE TTYTPAAALL AQTYTANQNG
     1261 VSGGFYVGGG LDNDPTGEGA VKSSDVKATI NLNSGSATLG SIFGERDEDG NRTTDTTVNL
     1321 VGSGFLGADE IVYPGAPTSV LADKRNPVLS LGKDAQAVFG GSNYQVRVVG VETLNKEGAG
     1381 TFVINGAAYD PGLPGGEPAY TLDVGNFNIK AGEVQLTTSQ AVDAEFGIRG AINNAATLVI
     1441 GRRITPGQNQ FGNSLVGQTE LIDGITIRQV GDYNQTAAGT TVVGLTPTLI RVYPSSVSSG
     1501 ATLPEPLGPV TGGVSVGYFT TPALAGVDVD PSRVNITGNL NLAGKVAVNV YRDSLYANGD
     1561 GYTLFTYTGT GAVSAAAAPT LTSPFVGFTL VHDTAKKEVR LEVKRSSYAG GANNPNAVAA
     1621 ATGLDSALAS AIGRIRTDAA GGAGFASVTE LGYAQDIANV ATALDFRLSS EQAAELFNEL
     1681 SSGEIYGSLA AVDQNGVFGQ TLDMLTNRRS FGGDFATQLW LNPVGNWGKF GDGDAFGASD
     1741 IRANSYGLAG GLDFAYAADG AFGFGGAYAE HDIAARGTPE AVDGRTWTVG AYVTQGFGPI
     1801 YANAKLAFGW TNYDATRTMS LLARTAEASI NAKQLDVSLE AGYDYRTGSM TITPYGKLVL
     1861 RRTSLEGFTE TGAGAFSLDV EGRKKTVFSP VLGVKLGTET ELSDSVTIRP FAKASYTFQG
     1921 NLPNDVTVSY VGGGDAFVLR GAEPDSFGMV EAGFEAKVAD RLNLFFTGSQ TFGGDNKVTG
     1981 LRGGVTFQF
//