LOCUS AMU95151.1 747 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 hypothetical
protein protein.
ACCESSION CP013342-2180
PROTEIN_ID AMU95151.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_11090"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003039946.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MKARHSNLLA GVATLAMLAT AAPAMAQTAD DGADTSAEAS GSGNEIIVTA QKRAQNIQDV
61 PISMEVVSGQ RLDDFNSNDI KAVMNYTPNV FVQSTAGNDV IYIRGFGSPP ANFAFDQSVS
121 LYVDGVYAGR SRQAQAPFFD LARVEVLRGP QGALFGKNTA AGAVSVVSAG PTDQFEGKLT
181 ANYNFDFKGT DFSGYLSGPL TDTLSARLAM KVLNQQGYIR NLATDHDDPE IKQQLLRLTM
241 KWEPSANFDY TAKVEYANRD VVGGITVSSP LTSAQDPHLT RYLDKSALGD EGTKTKSVMI
301 SGTGNIAIGD YTLTSVTGYS WFNANIVNGF DQTIPGGGGA FTNNSVYNSF PERFEQFSQE
361 IRVLSPTGRT FDFIVGAYYD HGKYRLDQLQ GFNIANLFGS PYFGRIDSRF NQTSDSWSLF
421 GQGTLNLADT FRVIGSLRYS HTSKDADFAS RLVYGPFAIR PISSAVGSLS EGNVDPSVTV
481 QFDVAPRIML YATYGRGSKS GGFVSNTLGT TNATFAFKPE RSTNYEAGVK STLFDGKVVA
541 NVSVYDTQFK NLQVSVYQPA TSSYLTGNAA SATSKGIEGS LALYLSPNLD ITASGAYQDI
601 KYDDYPGAAC LASQPSTCTP ATNNLAGYRL AYTSKWTGNV SAHGRVPLGD DLKLDITGVA
661 AGRSKYFDSD NQSPIFGIQK GYVKLDLRVQ LSDADERWFL AFVGKNLTNE LTTGSAFNLP
721 APITAVPRAI LYLEPPRNLS IEAGFKF
//