LOCUS AMU95124.1 995 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 beta-phosphoglucomutase
protein.
ACCESSION CP013342-2153
PROTEIN_ID AMU95124.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_10955"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003049415.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MERAPAERAP RVRMTVAISS AASDTMRLVR HGGDAVGDQA AALFALANGL VGVEGVADEC
61 AAAPCAYLPG AYVSRPIDYH ESFPGYATAT DTRIKCPSPV ALRLRIDGAP VDFAAADRLE
121 AESLLDLAWG QLRRRTRWRL ADGRTIEIAA VRIVPLDGDA CVATRLSVSP VDFAATIEID
181 LIFGTDADGG NADAADDPRI SGRLRPVWTV QPSEPGDTPS VVRFAQGAVE LAYRQRVASL
241 DAPVVRIDGG HMVRGALVAG GTLSVDRVVA MTCTRGHPVD IDALPEPQPF DAIAAAQQRA
301 VDQLWAHADF AIAGDDALTQ ALRFDLFQLH QSASRDPDHS IAAKGLSGEG YEGHYFWDAE
361 SFMLPVLALQ MPDRARTLLQ YRIGKLAAAR AHARGIGHAR GALYPWRTIG GAECSSHYPT
421 GSAQYHINGD IAHGVALYVA ATGDSDVRRA AAEMLFETAR IWPEIGAFDP RRGGAFCIYG
481 VTGPDEYSAL VDNDYYTNAI AARHLAYAAD TADWLAHTDP AAFAALAQAI GLDAEEVAMW
541 RRAAEAMWLP VDAEAGVSPQ DDAFLGRPKL ADLAPLDERG PLLMRYHPMI LFRHQIAKQG
601 NVLQAMAMDL VSLPLALQRR NFDYYSRVTA HDSTLSSVAF AIVAARLGED GEALDFHREA
661 AFVDLENRHG NTSHGLHMAA LAGSWLVLAH GWGGLWLGGD CPAFAPRIPA GWARYHFRLM
721 WRGSVIEVAV DAEGATYRRL SGAPVDIVDH GRPVRLADAA VRMARPAVQG VIFDLDGVLT
781 DTAEDHYHAW QALADQYGYA FDRAANDRLK GVDRAGSLRL ILDGAGASVD DARFEAMLAE
841 KNALYRARLA AYSPANLFDG VRALFAALRS AGIKIGLASA SRNAGHVVRL LGIADQFDFI
901 ADAGAIAANK PAPDIFLACA DGMGLPPERC IGIEDAQAGI SAIHAAGMVA IGIGSEEALP
961 DADVHVPAIG ALSVDQILSA EREAASAGNL SKKTG
//