LOCUS       AMU94983.1               940 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis terrae subsp. terrae NBRC 15098 2-oxoglutarate
            dehydrogenase subunit E1 protein.
ACCESSION   CP013342-2011
PROTEIN_ID  AMU94983.1
SOURCE      Sphingopyxis terrae subsp. terrae NBRC 15098
  ORGANISM  Sphingopyxis terrae subsp. terrae NBRC 15098
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 3979087)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
            111660), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284143
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3979087)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 2.8
            Genome Coverage       :: 110x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:33:14
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 3,797
            CDS                          :: 3,699
            Pseudo Genes                 :: 49
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 45
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
                     /mol_type="genomic DNA"
                     /strain="203-1"
                     /sub_species="terrae"
                     /culture_collection="NBRC:15098"
                     /type_material="type strain of Sphingomonas terrae"
                     /db_xref="taxon:1219058"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="1974"
     protein         /gene="sucA"
                     /locus_tag="AOA14_10240"
                     /EC_number="1.2.4.2"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_011542513.1"
                     /note="SucA; E1 component of the oxoglutarate
                     dehydrogenase complex which catalyzes the formation of
                     succinyl-CoA from 2-oxoglutarate; SucA catalyzes the
                     reaction of 2-oxoglutarate with dihydrolipoamide
                     succinyltransferase-lipoate to form dihydrolipoamide
                     succinyltransferase-succinyldihydrolipoate and carbon
                     dioxide; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MNLERQSFDV DEVQAGPSWA PKNWPLIDSD DLTAALDPQQ MQVAVKAAAA KAGAPLSNAE
       61 VERAADDSIR AMMLIRTYRV RGHLAATLDP LGLTHRELPA DLTPEYHGFV GADQDRPIFL
      121 GGTLGLEKAT IREVVSILQA NYCGHVGLEY MHIADVEERR FLQERMEGAD KSIDFTANGK
      181 KAILNKVIEA EEWEKFLARK YVGTKRFGLD GGESMIPALE AIIKYGGQYG VKEIVYGMAH
      241 RGRLNVLANV LAKPYKVIFH EFQGGTANPE DVGGSGDVKY HLGTSTDREF DGVSVHMSLV
      301 PNPSHLEAVD PVVLGKVRAQ QVMRDDLAEH SQVLPVLIHG DAAFAGQGIV WECLGFSGIR
      361 GYNTGGCIHF IVNNQIGFTT SPQFARSSPY PSDVAKGVMA PILHVNGDDP EAVTFACKLA
      421 IDFRQQFKRD IVIDMWCYRR FGHNEGDEPS FTQPLMYAII RKHPPVSDLY ATRLEAEGVV
      481 SAGDAEAHRA EFVARLEDEF EASKTYKSNK ADWFAGRWSG LHAPADPENA RRNISTGVSE
      541 KLFDAIGRTM TTIPDDLEVH KTLRRVIDAR AAMFANRDDA EVFDWATAEQ LAFGTLLSEG
      601 YQVRLSGQDS GRGTFSQRHA VWVDQKDEHK YIPLTTVPHG RFEVLDSPLS EYGVLGFEYG
      661 YAMADPKSLV LWEAQFGDFA NGAQIMIDQF IAAGEAKWLR ANGLVLLLPH GYEGQGPEHS
      721 SARLERFLQL CAGDNIQVCN ISTPSNYFHV LRRQMLRPFR KPLIIMTPKS LLRHKLAVSQ
      781 RSDFIGEAHF RRIMSDRTPP EDAKVKRVVL CSGKVGYDLM EARDAAGLDD TTVIRIEQIY
      841 PFPGEALAIR LKKMKNLEEV VWAQEEPRNN GAWFFVEPLI EESLIDAGHK GMRARYAGRA
      901 AAASPATGLM SRHQTEQAAL VADALGLNVR AEIRRNKNKA
//