LOCUS AMU94834.1 707 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 nitrogen
fixation protein FixI protein.
ACCESSION CP013342-1862
PROTEIN_ID AMU94834.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_09490"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003041558.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MSVATASPLV ERDFAVPDIR CAGCISKLEQ GLVRDRRIAS ARVNFTEKRV HIACTPDAET
61 PDLVGAFALL GFEAHPIGDA PGEGDPEAAS SRELLRAVAV AGFAMMNVML LSVSVWSGAE
121 GATRDLFHWL SAAIALPTVA YSGRPFFRSA WRALRHGGTN MDVPISIGVV ITSALSVYET
181 ATHGQHAYFD GVVMLLFFLL CGRWLDSVMR DRARGGVTAL LRNMGTGATV LRGEDSGHWV
241 DATALQPGMV MLVAAGERLA ADGVIVAGST QIDLSLLTGE SAPQAVHVDD HVHAGTLNLG
301 APIRVRITAA GADTAIADIA RLMGEAAQGK SRYVRIADRA ARFYAPAVHT LALLAFTGWM
361 IAGAGWHHSL LIAVAVLIIT CPCALGLAVP AAQIVAAGAL MRVGVLIKDG SALERMAEVD
421 RALIDKTGTL TLGRPVATDL DAVDPAHRPL LLALAQASRH PLSEALTRGL SALGVVPEAV
481 QTIRETPGFG IEADWHGHKV TLGRPQSPAA GTALATELAI DGDPLATIRF ADQLRPDARA
541 AIDALAAEGI DATILSGDRA EAVAPVAREL GITAQTGMTP QDKLAAIARH AGAGHRVLMI
601 GDGLNDGPAL AAGYASMAPG SASDAGKNAA DCIFLGDRLM PVVQTVRMAR RTRRIVKQNF
661 ALAIGYNIIA VPLAIFGHVT PLIAAIAMSG SSLIVVGNAL RLKAAIR
//