LOCUS       AMU94794.1               802 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis terrae subsp. terrae NBRC 15098 DNA ligase-
            associated DEXH box helicase protein.
ACCESSION   CP013342-1822
PROTEIN_ID  AMU94794.1
SOURCE      Sphingopyxis terrae subsp. terrae NBRC 15098
  ORGANISM  Sphingopyxis terrae subsp. terrae NBRC 15098
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 3979087)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
            111660), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284143
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3979087)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 2.8
            Genome Coverage       :: 110x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:33:14
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 3,797
            CDS                          :: 3,699
            Pseudo Genes                 :: 49
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 45
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
                     /mol_type="genomic DNA"
                     /strain="203-1"
                     /sub_species="terrae"
                     /culture_collection="NBRC:15098"
                     /type_material="type strain of Sphingomonas terrae"
                     /db_xref="taxon:1219058"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="1974"
     protein         /locus_tag="AOA14_09290"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_003041642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MSLPAPFAGW FAHRGWRLRR HQADMLTAAQ RGESALLVAA TGAGKTLAGF LPSLIDLAAN
       61 PSDRLHTLYV SPLKALAADV ERNLLGPIAD MDLDISVESR SGDTSSDKKA RQRSRPPNIL
      121 LTTPESLSLL LSYPDSFAMF ADLKTVVIDE IHAFATGKRG DLLSLALARL ERVAPGLRRV
      181 GLSATIADAD AYRAWLAPEG DPARVTLVEG ERGADPDISI LLPEGAVPWA GHSGRYAVHQ
      241 VMAEIAKNRT TIIFCNTRGL AELIFQELWK VNDLSLPIAI HHGSLDREAR QRAENAMAEG
      301 RLRALVATSS LDLGLDWGDV DCVIQMGAPK GSSRLLQRIG RANHRLDEPS RALIVPGNRF
      361 EYLEARAALD AVEAGERDAD RFRPGALDVL AQHVMALACA APFREEDLLA EIRGAQPYRW
      421 IDAALFARLL GFVRDGGYAL KSYDRFRRLA PDGQGGWRIA HPRLAAQHRL NAGIIVDAPT
      481 LDVRFKNGRR LGSVEEYFAS TLTAGDTFAF AGLSLEVETI RDTDLIVRAT TRPARIPSYV
      541 GARMALSSRL ADRVRAFLAD PASWRRFPED VRFWLEMQAL RSVLPRPGEL LVETFPHEGA
      601 HYLVCYPFEG WNAHQSLGML LSKRMERAGL QPLGFVASDY ALALWSLKPV AHPEALFDAT
      661 ILEGEFVEWV ENSHLLKRAF REVAVIGGLI ERQHPGKRKT GKQVTFSTDL IFDVLRKYEP
      721 DHLLIEAAWA DARERLTDVA RLGDLLDRAA GTMVHQRLDR ISPLAIPVLV LIGRENVAAS
      781 DLDDALLGEL ADTLAATAMG SE
//