LOCUS AMU94738.1 729 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 peptidase M3 protein.
ACCESSION CP013342-1766
PROTEIN_ID AMU94738.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_09010"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003041764.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MLRIAPRPVR HLSMLLASTA LMMGYSQMSI AAEPAAKAPA SAPADANPLL APWTGPYEGV
61 PPWDKLDPDL FPDAFEKGMA EVKAEVQAVI DNPAAPTFEN THVPMQLAGE TMDRVFAMWG
121 VQTSNKSNDR VEDIDAEWSP KLTKFYTELF LDPKLFARYK AVYDTRLTSG LNAQQIRIVE
181 RSYDEMVRDG ANLPPADKAK LVDMNAKLEG LFSTFSSKLL GDEKLYTFVT DKAELDGLPA
241 GFVASLAAAA EAQGKPGQWA IKNTRSSAQP VLQNATNRAL REKVWRAFVN RGDNGDANDT
301 NATIAEILKL RQARAELLGF PTHADYRMAD TMAKTPANAM ALMMKVWPAA VARVHEEVAD
361 MQAIADAEAK AGKGPKITIE PWDYRFYAEK VRKAKYDLDE SEVKPYLQLD KLRDAMFWSA
421 GRLYDLGFRE NTGTIPVFDP KVKTFEVYNL KTGKNVGVLY LDNFARDGKR SGAWMTTYRS
481 EQGLGGERNV LASNNNNFTE GANGEPTLVS LDDATTLFHE FGHGIHYLLQ HVYYPALAGV
541 PRDFVEYPSQ VNENWLMTPE VLSKFATHYK TGEPMPQALV DKIIASSKFN QGFDTVEYLA
601 SAIVDMKLHD RKVPVTDVDA FERETLAEIG MPKEIVMRHR LPQFGHLFSS DAYSAGYYSY
661 LWSETMDADT WAAFMEAGGP WDRSVADKFR TILLMTGNET DRAEAYRAFR GRDPDVKALL
721 ERRGFPTSE
//