LOCUS AMU94687.1 1021 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 hypothetical
protein protein.
ACCESSION CP013342-1713
PROTEIN_ID AMU94687.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_08745"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_008995599.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MMMASLLGSS SAACVLLPAS SLLFVAPAYA QSQPAADTPS PQTEQLVGVG EAAETGEEIV
61 VTGSLFRRAN TETPSPVTVL SSTTLEQRGF NTVAEALQRV TAGNAGTMTQ GWNSGNNFAA
121 GANAVALRGL TVQSTLSVFD GLRMAPYPLA DDGQRNFVDL NTIPNAVIER IEVLRDGASS
181 TYGADAVAGV INVITKKQIE GLHANGSAGV SQRGDASEVR FDATYGYGSL ADQGFNVYVS
241 GEYLKQDALW ARDRGYPYNT SDWSRICNAA GSCLPNLNPN GVSPDGYFNG FSAVPGVAAV
301 RPVTTDGASI GSGRFAYLNP AAGCGRWDTI QVTPAQVDEA VTAPADGRVC TYNPTGQYSM
361 LQPDIERYGF TARFTANLGE DHQLYAQGNF YQTNTFSSSA PRSWTDRPTV PRSGAVVYNV
421 IAPVYVCPTG VGTLNGVGTG CNAANGVLNP YNPYAGAGQT AQIQFMPDRP TTDETSGRSL
481 RGAIGLSGSF GDSWRYSAEF TASNVQLTRV QNGYAIPQRI MDVVARGTFN FANPEANSQA
541 VWDYVMPTNI TRSESNLWQA TANLTRSLFE LPGGTLEAAL GLAYRHESID APSANPQNDA
601 HPYDRYYVIN AVGTSGSRNV FSGFGEINAP ILDQLEVNLS GRYDSYSTGQ SNFSPKVGVK
661 VTPIPQIALR GTWSKGFRIP SFNESFGTPT TGFVSQGGGT FCATYAAFCA AHGNNAYATS
721 PFSVGLTNVG NPKLSPERSE NITLGAIFEP IPNLSFTIDL WRIKVRDQIV GVSNIGPVIA
781 AYYANNGVVN IPGFTVTPGV VDQANPSALP HIGTILASYA NANRQELQGV DLGVNARFDL
841 TDNLRLTSAF EASYLDRNHL TLVDPLTGEA QDPQKFEGTL SPCNTTSCSG SPKWRATWQN
901 TLASGNTTVS VTAYYTAGYH VSQVDFGATP GDCASAVDAG AAAYPDGSPV MCKSKAIWNV
961 DLTASQKVND KFTLYANVLN LFDTKAPFDP NAAYGIYGYN PAWAGPNIMG RYFRIGAKLD
1021 F
//