LOCUS AMU94657.1 729 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 hypothetical
protein protein.
ACCESSION CP013342-1683
PROTEIN_ID AMU94657.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_08595"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_017502693.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MTGKARASAL AFVAILGTGS PIEATEGRRW TIENIAIVPT DFDLRLASDG RSLAYLERRA
61 DIETDKSVSI LHLYDLDSHR SREILRAPSA EQLRRLPDGR GWSLLIDRGD GLQLYKLDAR
121 GTLTLLLKRE AVVTVGQTEG GLFAVRSGAP RRIGILYHDW SPDGRWLWYA TLRPRPEPLA
181 MSIDATVVAQ RYRRRAPVKA TVELRLRSAA GEEWLVASRP AQDRLAFYYG ANVQWTREGP
241 RYQLEQGDAE RSGGTGTFIW SFATGSSHPA EQEPGFPSIG LVSGPHGGVL ASEGFGRELD
301 LTETRPDGRK IHYGPQPYYI GDPRAAGNWL ANDGRKAVLG VRTIPHPRYG LVLLGSRKVK
361 PLLVAGSLTA CDFRQDLAWG VCVEESLNQA PRLVHVAPES GEVRALASLS SVHESIAPLR
421 VTAHEWTNRL GYRSTGFIVW PRDYQQGKAY PAILITHGSD ADERFASPDL QWNYPAQLFA
481 ERGFLVILQN DPSARQQAEL WNAYMEWSGG PGVLGPSRLR ELIWLNGVYS FEDMIHELVG
541 KGIIDRERIG IAGYSRGSQM VNVAVTQSTI FGAASSGDGN YLEPASYADP KEGYHAIFGG
601 PPSGRHLASY RQLSPSLRAE KVCAPVLQQM ASPFAGAIDF YTALRDAEVP AQISLYPGED
661 IATDETHLFH IPSNRLRAMR ENMAWFDFWL RGRRDPNMAP ISTYDRWSTM AAQLRDCSRP
721 PSALQPEPS
//