LOCUS AMU94571.1 930 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 hypothetical
protein protein.
ACCESSION CP013342-1594
PROTEIN_ID AMU94571.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_08115"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003042089.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MLGAFLKRLL PALAAGMALV GLLPSGAHAA EKTDIYQTTS DSWKPNEDDR WLFDLRSGQY
61 RLGDGVRGYQ TPQGLCVDLA DVVLALDLAV RVDRKLRRAT GWVLDERRTF LIDRDAGEVR
121 AGSERFRIGA NMIRDTAAGW CVDLASLSKW IGVPISADLS NAVLRIDSKE KLPFQLAAER
181 RARAATIRPQ TRFDLASLPQ APRPYRMWST PSLDVVASAG VVSDKQGGSS TQARYEIFAA
241 GELLKQSFDA RLSSDDKGVP DSLRLRLYRT DPTGQLLGPL HATHYAVGDV SLLSTGIVAQ
301 SVPGRGAVLT NRPVERPDAF DKTDFRGDLP AGWDAELYRN GQLLAFTSPN GDGRYEFLGV
361 PLQYGSNRFE IVLYGPQGQV RREIRQLQVG LDSIPPQKTW YWAGIAQDDT DLIEFGGPRG
421 GAFRRGWRGS AGIERGLDTR TSIAAYFHSL LIENVRRNYG EAALRRSIGP TLLEFGVAYA
481 DDGGHALRAS WLAGFGETYI RADAMRGWGG FVSDRFINNI NGLYSVSIDQ SVKLGQAVLP
541 LHVDVAKIDR TSGVSSIGAS GRASASFRTM TLTGQIDWSR SDVPYGPDPP DNLTATLLAN
601 ARIGRVRLRG EARFALAGSN ADSRLTAIAE WSGKRDAEWR AELGYDKGLD RARAGIGYTR
661 RFDKFQLSGF GEVASDGSVA ASLSLAFSFG PRSRADGGGG GWRVSSEKLA SRGQVLAEVW
721 MDDNGDGIRQ PGEAAVADVP LTAGNGYVDS ATAKDGRATI DGLEPFRPVM IGIDAGSLPD
781 PYIQPALPGV VVTPRPGVAT HVALPLTAAG EIEGVAMRDG GNAIEGLQLE LVDAEGRVRA
841 TTLTEFDGYF LFESVAYGRY TVRIAKASAA ALRLDAAFAL SAVPGKQTPR VRLGTLALKP
901 LARALAGGDA AGGGQGGARA PPDDAKASGG
//