LOCUS AMU94382.1 736 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 penicillin-
binding protein protein.
ACCESSION CP013342-1404
PROTEIN_ID AMU94382.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_07150"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003046854.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MRRERQSSSA PKSSSSGKGS GKGPGSGGPS GLRLWLRRLF RWGLALALVG VVAVAVAVGI
61 AAQRIPSFEE LKKSPAGQTI RVHAADGTVF LSLGPNYGRW LTLRETPQVM QDAMVAVEDR
121 RFRYHPGVDP VGMTRAAVFA VEHYGTGRRM QGASTITQQL ARNIFLSNSY TWSRKLREMI
181 LSLALEWKFS KDEILELYLN KVYFGGGSYG IDAASRRFFG HSATQMSLSE AAVVAGLVKA
241 PSRYSPTADA QAALGRSGVV LETMVDAGFI TQAQADGAKP ADVQLAQETG QNSARYFTDW
301 ALPQLDMLID EGTEALDVYT TLDLGMQRAA TAAIQADTPK GVQGALVSLD RDGAVRAMVG
361 GTDYVASNYN RATQAMRQPG SAWKLFVYMA ALEAGYKVDD QVVDEPVTIN GWSPKNSSGR
421 FAGPMSLRTA FAYSVNTIAA KLGNEIGFSS VANMARRFGI TTPINTHPSM VLGSAEVRVI
481 DMTAAFAAVS RKGVSVQPYG INKVTTADGR LLYQKPAERG QVLVDNWVAA GITDLLQTAV
541 ATGTGRAAQI GRPVAGKTGT TSSNKDGWFL GFSSGLTTGV WMGRDDAKAV GGLQGGRAPA
601 KAFADYMRIA VARRPVEPFD TEVKLPEWQL EGDDEAYFGA PEENGGMVDE NGMPIELPAA
661 PDTAQGDVPP PPADGPVLNQ QWIEEQTGRR PPADNGAAAP KAAPQQLRPP APAPPKAPPP
721 VLKAPPARTP ANGEGN
//