LOCUS       AMU94357.1               484 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis terrae subsp. terrae NBRC 15098 RNA polymerase
            sigma-54 factor protein.
ACCESSION   CP013342-1379
PROTEIN_ID  AMU94357.1
SOURCE      Sphingopyxis terrae subsp. terrae NBRC 15098
  ORGANISM  Sphingopyxis terrae subsp. terrae NBRC 15098
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 3979087)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
            111660), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284143
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3979087)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 2.8
            Genome Coverage       :: 110x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:33:14
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 3,797
            CDS                          :: 3,699
            Pseudo Genes                 :: 49
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 45
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
                     /mol_type="genomic DNA"
                     /strain="203-1"
                     /sub_species="terrae"
                     /culture_collection="NBRC:15098"
                     /type_material="type strain of Sphingomonas terrae"
                     /db_xref="taxon:1219058"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="1974"
     protein         /locus_tag="AOA14_07025"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_003046764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MALGPRLDLR QSQSLVMTPQ LQQAIKLLAL SNLELEAYLA EALEGNPLLD ATPGDREPGD
       61 DEGGDEAPPS DGPPADTDLA LSSEAGTADD LDVDFAEERF HHDSASDSVG LSGDSEGIDF
      121 DSFAGDDGTL YDHLLAQVGE RFSGIEAMVA EQIVALIDEA GYLRADLGEL AQRLGVPLAL
      181 VEAVLAGVQS FDPSGVGGRD LAECIAIQAR EADRYDPAMA TMIAHLDLVA KGAFPQLKRI
      241 CGVDDEDLAD MIRELRAYDP KPGLRFGGTA TQAVVPDLYV RQTAKGWAVE VNSGTLPRLL
      301 VNRRYYTELA KDAAAKSKAW LSEQLAGANW LVRALDQRQR TIVKVASEIV KQQEGFFLHG
      361 VAHMRPLTLR QVAEAIGMHE STVSRVTSNK YLSCARGLFE LKYFFSSGIS ATEGDGAVSA
      421 EAVKSRIRAM IEAEDPKAIL SDETIAQKLS AEGHDIARRT VVKYREAMGY GSSVQRRRQK
      481 ALAG
//