LOCUS AMU94277.1 846 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 ATPase protein.
ACCESSION CP013342-1298
PROTEIN_ID AMU94277.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_06610"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003046486.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MSDQLRLDIP LLLPEVADTA DRCVARLTSE LEGREGVDKV HVVRSSDGSP PQLCIHYRPD
61 ILPLERVRQL ARSAGAELTG QYQHLFWDDL EGVGHARRAR TIGLKLREMP GVIEAEVGAA
121 GTLRAEFQRS ETSIEMIRKT LSDMGVTQKS TAVAAAAPAQ AAHQHGDDGH DHGPDHAHGP
181 DHKHGHTGED SHDHGHDHGG IFGERTELIF ALLCGLVLGI GFAIEKLAAA PEWVPLAFYI
241 AAYGFGGWFT VREAIENLKL KRFEIDTLML VAAAGAAALG AWAEGALLLF LFSLGHALEH
301 YAMGRAKRAI EALAELAPQT ATVKDADGTA REVPVEQLAI GDTVIVKPNE RLAADGFVVV
361 GRTAIDQAPV TGESVPVDKE PVADRAQAAA KPDALDAKYR VFAGTINGYG AIEIAVTRLA
421 ADTTLAKVVK MVSEAETQKS PTQRFTDKFE RIFVPSVLAL VFVLLFAWVV VDEPFRDSFY
481 RAMAVLVAAS PCALAIATPS AVLSGVARAA RGGVLVKGGG PLENLGSLTA LAFDKTGTLT
541 EGKPRITDVL PASGVPKEEL LRIAVAVERL SDHPLAAAIA RDGEAMLTST RVPVADDLNS
601 LTGRGVTAKV EGETVLIGKA EMFGADGIAP IGGEVAAAIA GLREQGRTTM VVRMGDRDLG
661 AIGLMDTPRE AARTAIAKLR ELGIGRMIMI SGDHQKVAES IAAEVGIDEA WGDLMPDQKV
721 DAIRDLKAQQ PVAMVGDGVN DAPAMASATV GIAMGAAGSD VALETADVAL MADDLAHLPF
781 AIGLSRQTRR IIRQNLVVSL GVVVVLVPAT IFGLGIGAAV AAHEGSTLVV VANALRLLAY
841 RDRSMG
//