LOCUS AMU94104.1 549 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 peptidase M20 protein.
ACCESSION CP013342-1124
PROTEIN_ID AMU94104.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_05735"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003043170.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MFLRPLAALL AAAFAVPALA QDISTANLTE TVRTLASDQF QGRAPGTVGE ERTVGYLIGR
61 LQALGLEPAG PNGEWTQPVP LLHTRLGTPT ALAFDRQGSA TPLTLGTDIY VSSQQDKDRA
121 AIADAPMVFV GYGVHAPERG WDDFKGVDLK GKVAVFLVND PDFVATKGED SFGKFGGRTM
181 TYYGRWTYKF EEAARRGAIA ALIVHDTDGA GYGWNVVKSP GGENYSLVVP PEKATSLALQ
241 GWISGEASTR LFASAGQDLA KLRIAARRKD FRPVDLGTGF RASIPVTHEV VRSQNVLAKI
301 SGTDRADEVV MFGAHWDAYG EGKPDEKGRI YRAGANDDAL GVAALIEIAR GFKAAPPTDR
361 TLLFAFWTAE ERGLLGSEAY AQAPVYPVEK TVANLGIDIL QTAGKSKDVI LVGKGQGTLE
421 DDLARVAAMQ GRTVSPESLP ERGLFFRADH FSMAKRGVPV LLLMGIAGVS DLVEGGKEAG
481 QKWVDDYTGR CYHQACDAWD ESWNLAGAAQ DIALFYTIGD ELARSGKWPG WKSGSEFKAL
541 RDQTAATRK
//