LOCUS AMU93819.1 676 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 potassium-
transporting ATPase subunit B protein.
ACCESSION CP013342-835
PROTEIN_ID AMU93819.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_04280"
/EC_number="3.6.3.12"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003047296.1"
/note="One of the components of the high-affinity
ATP-driven potassium transport (or KDP) system, which
catalyzes the hydrolysis of ATP coupled with the exchange
of hydrogen and potassium ions; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/transl_table=11
BEGIN
1 MTTPTSMFSP ALVVPAMRDA IRKLNPRELM RNPVMFTTAC VALLMTVLLA LGDPGLSLGF
61 ETQLVAWLWL TVLFGTFAEA LAEGRGRAQA ASLRATKAEL RAKLMLGVGE TYEIVAASQL
121 EKGEIVLVET GDLIPADGEV IEGVASVNEA AITGESAPVI REAGGDRSAV TAGTRVISDR
181 VKVRVTAEPG QGFLDRMIAL VEGAERRKTP NEIALTILLV GLTIIFLIAV ATIPGFASYA
241 GGSIPVALLA ALLITLIPTT IAALLSAIGI AGMDRLVRFN VLAKSGRAVE AAGDVDVLLL
301 DKTGTITIGD RQASEFRALA GVDDETLAEA ALLASLADET PEGRSIVTLA RERYAIRVAA
361 LPAGSDVIPF TAQTRLSGVT VAGVTIHKGA VDSIFKAHPD TVSSPAAQEL RRITDEVARA
421 GGTPLAVVRD GRLLGAIHLK DVVKAGVRER FGELRKMGIR TVMITGDNPL TAAAIAAEAG
481 VDDFLAEATP EDKLALIRRE QAEGRLVAMC GDGTNDAPAL AQADVGVAMN TGTQAAREAG
541 NMVDLDSDPT KLIEVVGLGK QLLMTRGALT TFSVANDVAK YFAIIPAIFV FLYPELGVLN
601 VMRLATPESA VLSAIIFNAL IIPCLVPLAL KGVRYRPMPA GPLLARNLSI FGLGGLVAPF
661 VGIKLIDLAV SGLQLA
//