LOCUS AMU93540.1 751 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 phosphoribosylformylgly
cinamidine synthase protein.
ACCESSION CP013342-552
PROTEIN_ID AMU93540.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_02835"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003040560.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MTQTASAPAS VITPEIVADH GLSPEEYERV LAALGREPNL VELGIFSVMW SEHCSYKSSR
61 LHLKKLPTEA PWVICGPGEN AGVIDIGEGP DGTKLAAIFK MESHNHPSYI EPYQGAATGV
121 GGILRDVFTM GARPVANLNA LRFGRPDHPK MKHLISGVVH GIGGYGNCVG VPTVGGEVNF
181 HKAYDGNILV NAMTVGVAEQ DKIFYSAASG VGNPIVYVGS KTGRDGIHGA TMASADFGED
241 AEEKRPTVQV GDPFTEKLLI EACLELMASD AIVAIQDMGA AGLTSSSVEM ASKGGVGLHL
301 KMDDVPQRET GMTAYEMMLS ESQERMLMVL KPGKEEFAKA IFEKWELDFA VIGTVTDTGR
361 MVLEHHGEIV CDIPLAPLAD DAPLYDRPHV PTPKQPDLTD VPETADVAAD LKTLMGSPDI
421 ASRRWIYEQY DSQVGGDTVQ IGGDAALVRI HGTGRALAMS TDCTPRYCYA DPVEGGKQAV
481 AETWRNISAV GATPLAITNC LNFANPQRPE IMGQITGCLD GMGQACRALD YPIVSGNVSL
541 YNESKATGGG SAILPTPAIG GVGVIDDLSK AVGIGFKRTG DIVLAVGERA GHLGQSVWLR
601 EILGREEGPP PPVDLRAEKR TGDFIRHAIN AGWITACHDV SDGGVAVALA EMALKSGIGV
661 LVSEEQPFGI AESFFGEDQG LYLVTVCDTC LADFLDAANR ADVPVDPLGR TIKDRIVFEL
721 PESDFSVTLA ELREAHEGFF PALMGADAAL A
//