LOCUS AMU93256.1 765 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 peptidase protein.
ACCESSION CP013342-268
PROTEIN_ID AMU93256.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_01405"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003039852.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MTNAPPPPTS AAQSARTILT RLHEVMAART NAQSKLNQVV GIIGECLDSE VCSIYLLREG
61 ALELYATRGL KQEAVHVTRL GLGEGLVGTI AEQIETLNLD EAAAHPDFSY RPETGEELFH
121 SFAGVPIIRR ERAVGVLCVQ HAEPRRYEEI EIETLQTVAM VLSELIANAD LVDTAARIDA
181 GETDQSMQRL SGQKLVDGMG AGIAVFHQPR VHIEHTVADD IEAERHRVYA AFDKMREQID
241 RMASQAEFGV GGEHEEVLET YKMFAYDEGW SRRINEAIDS GLTAEAAIER VQQRTRMRMR
301 QIDDALLRDR MHDLEDLSNR LIRIVSGQMG TAAQVGLRQD SILVARNLGP AELLEYDRRR
361 LKGVILEEGS LTAHVIIVAR AMGVPVLGRV RDVRTSIREG DMLLLDAAAG TLHVRPTQAV
421 QDAFDAKLVI SQKRRASLAS LRDLPAITKD GVPIELMINA GLREDVAALD LTGARGIGLF
481 RTEFQFLVSA TLPQRERQQR LYRDVLDAAG DRPVIFRTVD IGGDKALPYM NVDENALEEN
541 PAMGWRALRL ALEREGLLKV QARALMEAAA GRTLNVMFPM VSEPWEYEAA RQLFINQRAW
601 LKQHNKKLPS AIRYGAMLEV PGLIETLDLM LPHLDFLSIG TNDLTQFLFA ADRAHPRLAE
661 RYDWLSPTVM RYLARVVKMV SGSKVTLGVC GEMGGRPLEA MALLGIGIER LSITPAGVGP
721 VKAMIRSLDL GALRRDVPAI LAHPAANPRG QYLDWAQKHH VDLGE
//