LOCUS       AMU93085.1               627 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis terrae subsp. terrae NBRC 15098 propionate-
            -CoA ligase protein.
ACCESSION   CP013342-91
PROTEIN_ID  AMU93085.1
SOURCE      Sphingopyxis terrae subsp. terrae NBRC 15098
  ORGANISM  Sphingopyxis terrae subsp. terrae NBRC 15098
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 3979087)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
            111660), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284143
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3979087)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 2.8
            Genome Coverage       :: 110x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:33:14
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 3,797
            CDS                          :: 3,699
            Pseudo Genes                 :: 49
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 45
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
                     /mol_type="genomic DNA"
                     /strain="203-1"
                     /sub_species="terrae"
                     /culture_collection="NBRC:15098"
                     /type_material="type strain of Sphingomonas terrae"
                     /db_xref="taxon:1219058"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="1974"
     protein         /gene="prpE"
                     /locus_tag="AOA14_00475"
                     /gene_synonym="yahU"
                     /EC_number="6.2.1.17"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_003039629.1"
                     /note="catalyzes the formation of propionyl-CoA using
                     propionate as a substrate; PrpE from Ralstonia
                     solanacearum can produce acetyl-, propionyl-, butyryl- and
                     acrylyl-coenzyme A, and Salmonella enterica produces
                     propionyl- and butyryl-coenzyme A; not expressed in
                     Escherichia coli when grown on propionate/minimal media;
                     ATP-dependent; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MSDAYRQAWT DSITDRDAFW GAAARAIDWV TPPQRIHDAD AGWFAGGTLN TAANCLDRHV
       61 AAGRGDAPAL VYDSPVTGQV RRFTYAQLLE ESGRVAAMLK RLGVGKGDRV VIYMPMIPET
      121 VFAMLACARI GAIHSVVFGG FAALELAKRI DDAAPRLILT ASCGIEGGRL IAYKPMVDEA
      181 LAIANHQVKH VVLVQRDALA ADLQPPRDID WMTLRSECAG DPIPEPTVMA ANDPLYILYT
      241 SGTTGTPKGV VREHGGHAVA LAWSMANIYG IGAGDCFWAA SDVGWVVGHS YIVYAPLLVG
      301 ATTILFEGKP VGTPDPGTFW RTIVRHGVKT FFTAPTAIRA IRKEDPDAGF LADIGTGDLE
      361 AVFLAGERAD PDTIAWLEEK TGLPVIDHWW QTELGWPAIA SCFALGDLRR KRGSAGFPVP
      421 GYEFVVLGED GQPVPDGQSG SITIKAPLAP GAFRTLWNNP AGFARNFESF PGYYETGDAG
      481 HFDADGFLHI MGRTDDIINV AGHRLSTGQM EQIVAQQDGI AECAVIGADD AIKGMIPVAF
      541 VVPRAGAADP DTLVRTVIAA VRAELGAVAA LKTAYVVPQL PKTRSGKILR NLLRSIVNGQ
      601 HVECPPTIED PGVPTIIRAA VAARSAL
//