LOCUS       AMU93056.1              1164 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis terrae subsp. terrae NBRC 15098 transcription-
            repair coupling factor protein.
ACCESSION   CP013342-62
PROTEIN_ID  AMU93056.1
SOURCE      Sphingopyxis terrae subsp. terrae NBRC 15098
  ORGANISM  Sphingopyxis terrae subsp. terrae NBRC 15098
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 3979087)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
            111660), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284143
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3979087)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 2.8
            Genome Coverage       :: 110x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:33:14
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 3,797
            CDS                          :: 3,699
            Pseudo Genes                 :: 49
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 45
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
                     /mol_type="genomic DNA"
                     /strain="203-1"
                     /sub_species="terrae"
                     /culture_collection="NBRC:15098"
                     /type_material="type strain of Sphingomonas terrae"
                     /db_xref="taxon:1219058"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="1974"
     protein         /locus_tag="AOA14_00325"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_003039563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MTRPSADIFA AITSASAPLT LARTADGFLP LLLADLARTS DKRLVYVATD DTAMQAVADA
       61 APFFAPDLVI HRFPAWDCLP YDRAGPSMRV SADRLATLSA LQAPPKRGEL ILTTVAAIAQ
      121 RTLTPFRIRQ LATTLAPGQR IDRDALAELL VANGFNRVDT VADQGEFAVR GSLVDLFPAG
      181 EDAGLRVDFF GDEIESIRRF DPADQRSLGP AKSLQLLPAA ETLLDQDTIK RFRSSYREMF
      241 GAQATGDPLY QAVSEGRRQA GMDHWLPLFE ERLATLFDHI DPATPVLRGH RTDATAETRF
      301 DAITDYHANR VAAEREQAGS YRPLAPDTLY LTSSEWAAAE RDRPVHVVSP FDVPPAPNVI
      361 DLESFAARDF TPERAADLNV YDKVADHLSD ERRKGRRTII ASYSVGARDR LSGLLRDHGV
      421 SALASADGWQ EALGTASADA GGATAMVVLP LDHGFASDAI SLLTEQDILG ERLVRRQKRR
      481 KSADAFLAEL ATLSVGDLVV HLDHGIGRYE GLTSIPVGKS PHDCVALTYA GGDKLYVPVE
      541 NLDVLSRYGG ESDGVALDKL GGEAWQRRKA RMKERIREIA GELLATAAQR ALRPGEVLAQ
      601 DAAYPAFADR FPYQETDDQD RAIGDVLEDM ASGRPMDRLV CGDVGFGKTE VALRAAFVAA
      661 MAGVQVAVVV PTTLLARQHY TNFVERFKGF PVNIGRLSRL VPAGEAQKTR DGLASGQIDI
      721 VVGTHAVIAK SVEFRNLGLV IVDEEQRFGV VHKERLKQLK ADVHVLTLTA TPIPRTLQMA
      781 MSGLRELSVI QTPPVDRLAV RTYVAPWDPV VIREALLREH DRGGQSFFVT PRIKDLPDIE
      841 EFLRTRVPEI KYVVAHGQMA PGEVEERMSA FYDRKYDVLV STTIVESGLD IPSANTLIVH
      901 RADRFGLAQL YQLRGRVGRS KTRAYAYLTT PEGGAITDTA EKRLKLLGDL DTLGAGFQLA
      961 SHDLDIRGAG NLVGDEQSGH IREVGFELYQ SMLEEAILVA KAEGAGVAPP REALSPVITV
     1021 DAPILIPEDY VPDLPLRMAL YRRLNEAEDR TGLDGFAAEM IDRFGPLPPE TANLIQLMEI
     1081 KANARAAGIA KLDVGTKGAL VSFHGDQFAN VPGLIAYVER LKGRARIRPD NKLSVSGDWI
     1141 SAGARLNGAL QLSKGLGKLA RQAS
//