LOCUS AMU93040.1 700 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 pyrophosphatase
protein.
ACCESSION CP013342-46
PROTEIN_ID AMU93040.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /gene="hppA"
/locus_tag="AOA14_00245"
/EC_number="3.6.1.1"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003039517.1"
/note="pyrophosphate-energized proton pump;
pyrophosphate-energized inorganic pyrophosphatase;
H+-PPase; can cleave pyrophosphate to two phosphates; can
generate a proton motive force and drive pyrophosphate
synthesis when PMF is sufficient; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/transl_table=11
BEGIN
1 MNPVLIAIAC GLLAVLYGFI TSRQVLGASA GNDKMQEIAA AIQEGAQAYL KRQYSTIAIV
61 GVVVAVIVAG ALGPVSGTGF VIGAVLSGVA GFIGMNISVR ANVRTAAAAQ KGLQAGLTLA
121 FRAGAITGLL VAGLALLAIA VFYWVLTVQM GKTVGGDDRT VVDGLVALAF GASLISIFAR
181 LGGGIFTKAA DVGADLVGKV EAGIPEDDPR NPAVIADNVG DNVGDCAGMA ADLFETYVVT
241 VGATMVLTAL LLKGAGDLLP GLMSLPLLIG GVCIITSIIG TYFVRLGGSN NVMGAMYKGF
301 LVSAILAVPA IWFATSHALG GMETAVTGTD FTGRDLFYCS LLGLVITGLI IWITEYYTGT
361 GFRPVRSIAK ASETGHGTNV IQGLAISLEA TALPTLVIVA GIIIAYQLAG LIGIAYAATA
421 MLALAGMVVA LDAYGPVTDN AGGIAEMAGL DDSVREKTDL LDAVGNTTKA VTKGYAIGSA
481 GLAALVLFAA YTTDLREFFP SLTVNFSLEN PYVIVGLLLG ALLPYLFGAM GMTAVGRAAG
541 DVVKDVRDQF AGDPGIMAGT SKPNYARTVD LVTKAAIKEM IIPSLLPVLA PIVVYFVISA
601 VAGQENGFAA LGALLLGVIV GGLFVALSMT SGGGAWDNAK KYIEDGNHGG KGSEAHKAAV
661 TGDTVGDPYK DTAGPAVNPM IKITNIVALL LLAALAGHAM
//