LOCUS AMU92995.1 662 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 chromosome
partitioning protein ParB protein.
ACCESSION CP013342-1
PROTEIN_ID AMU92995.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_00015"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_013832732.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
intron_pos 74:0 (1/1)
BEGIN
1 MIKSIPLAKL VQSPRNVRRH GDPSADSELK ASIAAHGLLQ NLIVRPAARG KFEVEAGERR
61 RCALLALAEE KVLPKGYEVI CLVLEDDAEI AVETSLAENF HRLAMNPADE AQAFAALIDA
121 GASTEDVARR FGLTVRFVEG RLRLAILAPV VFDALASGEI TLDLAKAFGA TSDQEIQARV
181 YEQASSGYYA PSVDSIRRMV LSGTVRGSDA RARLVGREAY IAAGGRIERE LFDDDDSESW
241 VDVALLETLA VQEMEKRAKA LAAEQGLAWV KPTLDAYASH DLVEGLIRLP AEPAPLTDAE
301 LARLDELDAS YDEHAAILED EDSAEEAIAA AEATIEAIER ECQDIRAKPP ELAPELKADA
361 GMILVLSRDG TPVLQPVFYG ERDIEVVGDE DVVEVVASVG SDGKRRAALS KRLVDELAMQ
421 RRDVLALHVA SDPGLSLDIM VFTLADADTH DWRSRAATTL RGGVPAGPIV GFEAKDAPAS
481 ASLADLRSGL DESWRSGEDA SSRFKMFRAL ADESRAAWLG FVVARTLEAS LNMAGERQIT
541 FQDHLGSTIG IDMAQWWRPT AANYFDRVSK QVILDALTDV GGLELSSRFA SVKKGDLAMS
601 AERVFAGTYI TEVEVRERAL AWVPEVMRFA DQPEIPADNE AQSPDADFVA NDDNQPPSEL
661 AA
//