LOCUS AEG55276.1 717 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 Polyribonucleotide nucleotidyltransferas
e protein.
ACCESSION CP002781-3501
PROTEIN_ID AEG55276.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_3571"
/EC_number="2.7.7.8"
/inference="protein motif:HAMAP:MF_01595"
/note="KEGG: rhi:NGR_c35730 polynucleotide
phosphorylase/polyadenylase; PFAM: Exoribonuclease,
phosphorolytic domain 1; Exoribonuclease, phosphorolytic
domain 2; Polynucleotide phosphorylase, phosphorolytic
RNA-binding, bacterial/organelle-type; K Homology, type 1,
subgroup; Ribosomal protein S1, RNA-binding domain;
TIGRFAM: Polyribonucleotide nucleotidyltransferase; HAMAP:
Polyribonucleotide nucleotidyltransferase; SMART:
RNA-binding domain, S1; K Homology"
/transl_table=11
/db_xref="InterPro:IPR001247"
/db_xref="InterPro:IPR003029"
/db_xref="InterPro:IPR004087"
/db_xref="InterPro:IPR012162"
/db_xref="InterPro:IPR015847"
/db_xref="InterPro:IPR015848"
/db_xref="InterPro:IPR018111"
/db_xref="InterPro:IPR022967"
BEGIN
1 MFETHKVEIE WAGRPLKLET GKIARQADGA VLATYGETVV LATVVSAKAP KPGQDFFPLT
61 VNYQEKTYAA GKIPGGYFKR EGRPSENETL VSRLIDRPIR PLFPDGYKND TQVIITVMQH
121 DLENNPDVVA MVAASAALTL SGVPFMGPVG GARVGYINGE YVLNPHLDEM DESTLDLVVA
181 GTQEAVLMVE SEAKELPEDV MLGAVVFGQK GFQPVIDAVI RLAEVAAKEP REFNPEDHSA
241 LENAMLSIAE DELRNAYKIT EKAARYAAVD AVKAKVKEHF LPEGVENPAH TAEEIAAVFK
301 HLQAKIVRWN ILDTKSRIDG RDLVTVRPIV AEVGILPRTH GSALFTRGET QAIVVATLGT
361 GEDEQYVDSL TGMYKENFML HYNFPPYSVG ETGRMGSPGR REIGHGKLAW RAIHPMLPTA
421 EQFPYTLRVV SEITESNGSS SMATVCGTSL ALMDAGVPLA KPVAGIAMGL IKEDDRFAVL
481 SDILGDEDHL GDMDFKVAGT DAGITSLQMD IKIEGITEEI MGVALNQAKG GRLHILGEMA
541 KAISESRGQL GEFAPRIEVM NIPVDKIREV IGSGGKVIRE IVEKTGAKIN IDDDGTVKIA
601 SASAKEIEAA RKWIHSIVAE PEVGQVYEGT VVKTADFGAF VNFFGARDGL VHISQLASER
661 VAKTTDVVKE GDKVWVKLMG FDERGKVRLS MKVVDQATGK EVVAEKSEKK DGGEAAE
//