LOCUS AEG55271.1 889 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 translation initiation factor
IF-2 protein.
ACCESSION CP002781-3496
PROTEIN_ID AEG55271.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_3566"
/inference="protein motif:TFAM:TIGR00487"
/note="KEGG: smd:Smed_3441 translation initiation factor
IF-2; TIGRFAM: Translation initiation factor aIF-2,
bacterial-like; Small GTP-binding protein; PFAM: Protein
synthesis factor, GTP-binding; Translation initiation
factor IF-2, N-terminal; Initiation factor 2 associated
region, bacterial; Translation elongation factor
EFTu/EF1A, domain 2"
/transl_table=11
/db_xref="GO:0003743"
/db_xref="GO:0005525"
/db_xref="InterPro:IPR000178"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR006847"
/db_xref="InterPro:IPR013575"
BEGIN
1 MTDNKDDKTL SVAGKKTLTL KPSGVTQGTV RQDMGRGRTK AVVVETKRTR GPLKHKDERP
61 ITPVAATPAA RPAEQRPMPP QPSGRPAPQP QPHQPRQEQN RPRGGVVLND LSAGEMEARR
121 RALAEAQIRD AEEAKRRAED EVRRRREEEE RLAREKEEAA RRAAEEAARP PVEAEKTEEK
181 VEAASPAVGE RRAETRPQPG RAAPAATPAA PDGAALRGRR GTESEEDERR RSGAGAPRGK
241 VVRPEPAKPA PRAKGDEGRR QGKLTLTTAA VDEDGSQRGR SLSAMRRRQE KFKRSQMQET
301 REKISREVVL PETITIQELS QRMSERAVDV IKFLMKEGQM MKPGDLIDAD LAELIAGEFG
361 HTVKRVSESD VEEGIFNISD VDDDMQSRPP IVTIMGHVDH GKTSLLDAIR HANVVAGEAG
421 GITQHIGAYQ VEQNGQKITF IDTPGHAAFT AMRARGAQAT DIAVLVVAAD DSVMPQTIES
481 INHAKAAGVP IIVAINKIDK PSANPQKVRT ELLQHEVFVE SMGGEVLDVE VSAKNQTNLD
541 KLLEAILLQS EILDLKANPN RTAEGTVVEA ELDRGRGAVA TVLVQKGTLT PGQIIVAGDQ
601 WGRVRALVND KGEHVKAAGP STPVEVLGLS GTPAAGDRFA VVESESRARE ISEYRQRLAR
661 EKAVARQSGS RGSLEQMMTQ LQTSGVKEFP LVIKGDVQGS IEAISGALDK LGTDEVRARI
721 VHSGAGGITE SDVSLAEASN AAIIGFNVRA NKQARDASER AGIEIRYYNI IYDLVDDVKA
781 AMSGLLSPER RETFLGNAEI LEVFNITKVG KVAGCRVTEG KVERGVGVRL VRDNVVIHEG
841 KLKTLKRFKD EVSEVQSGQE CGMAFENYED IRAGDTIECF RVEHVTRTL
//