LOCUS AEG55262.1 626 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 DNA polymerase III, subunits
gamma and tau protein.
ACCESSION CP002781-3487
PROTEIN_ID AEG55262.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_3557"
/inference="protein motif:TFAM:TIGR02397"
/note="TIGRFAM: DNA polymerase III, subunit gamma/ tau;
PFAM: DNA polymerase III, gamma subunit, domain III; DNA
polymerase III, subunit gamma/ tau, C-terminal; ATPase,
AAA-type, core; KEGG: smd:Smed_3432 DNA polymerase III
subunits gamma and tau; SMART: ATPase, AAA+ type, core"
/transl_table=11
/db_xref="GO:0003887"
/db_xref="GO:0005524"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR003959"
/db_xref="InterPro:IPR012763"
/db_xref="InterPro:IPR022107"
/db_xref="InterPro:IPR022754"
BEGIN
1 MSDEAPTSSP ILPVEKPAAY RVLARKYRPK DFSDLMVGQE PMVRTLTNAF ETGRIAQAYM
61 LTGVRGVGKT TTARILARAL NYKTAEIDKP TIDLRVPGEH CQAIMDGRHV DVIEMDAASH
121 TGIDDIREII EQVRYRPVSA RYKVYIIDEV HMLSTQAFNG LLKTLEEPPE HVKFIFATTE
181 IRKVPITVLS RCQRFDLRRI SASDLVGLFS TILGKEGVPF DPEALAMVAR AAEGSARDGL
241 SLLDQAIAHG GGSVEIETVR SMLGLADRAR IVDLFEHVIK GDVAGALDEF AAQYEAGANP
301 TVVLTDLADF THLVTRLKYV PDAINDQSLS EIERTRGAEF AGSVAVTTLS RVWQMLLKGI
361 PEAESSARPA GAAEMVLIRL AHAAHLPSPE EAARRLLDLS GGEGGGRPAP NGGGGGGGAQ
421 APAGTPVEAR AVETAVSRPS GNGATMLRAV PSSAPPQPIS VGRIEERTVA SAAAKPEPKV
481 PVNSIGDIAD LCAKNRDIKL KTMVRGFLRL VHIEPGRLDV NLPDDAPKTL LNELAVKLKE
541 WTGIHWVVSY SREQGEPTLV EAEQRAQEQR VNDARQDPDV AAILARFPGA RITDVRIRAA
601 EEELESLAPA AAESEDGDIV PDDDIE
//