LOCUS AEG55119.1 987 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 sarcosine oxidase, alpha subunit
family protein.
ACCESSION CP002781-3344
PROTEIN_ID AEG55119.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_3414"
/inference="protein motif:TFAM:TIGR01372"
/note="KEGG: smd:Smed_3287 sarcosine oxidase alpha subunit
family protein; TIGRFAM: Sarcosine oxidase, alpha subunit,
heterotetrameric; PFAM: Glycine cleavage T-protein,
N-terminal; Conserved hypothetical protein CHP00275,
flavoprotein HI0933-like; Glycine cleavage T-protein,
C-terminal barrel"
/transl_table=11
/db_xref="GO:0008115"
/db_xref="InterPro:IPR004792"
/db_xref="InterPro:IPR006222"
/db_xref="InterPro:IPR006277"
/db_xref="InterPro:IPR013977"
BEGIN
1 MSSYRLPKRG LVDRNVPLSF TFDGRPMQGL EGDTLASALL ANGRMLVGRS FKYHRPRGIL
61 TAGAAEPNAL VTVGRGGRAE PNTRATMQEL YEGLEARSQN RWPSLAFDIG ALNGLLSPFL
121 GAGFYYKTFM WPAPLWEKLY EPVIRRAAGL GKASYEADPD AYEKSWAHCD LLVIGAGPTG
181 LAAALTAGRA GARVILVDEG SLPGGSLLSD TATIDGKAAA DFARDTSDEL RSMPNVQVLV
241 RTTAFGWYDG NVFGAVERVQ KHVREPASHL PVERLWRIVA GKALLATGAE ERPLVFGGND
301 RPGVMMAGAM RAYLNRYGVA PGRTPAIFTT NDTGYTLAQE LEAAGVDVVA IVDSRPAAGV
361 DYRGKARLVR EAVVCGTKGG KAISAIEVHH GGRTETIAVD ALAMAGGFDP IIHLACHRGG
421 KPVWSAEKAA FLAPGSLKGL EVAGGAAATT GLAACLGEGA ARAEAIVREL GLPCPPVAVV
481 KVESEEGIRS PAPLWSIPGI KDKAFVDFQN DVHLKDIGLA VREGYSHVEL AKRYTTSGMA
541 TDQGKLSNVN AIGLIAKARG VSPAEVGTTT FRPFYTPVSF GALTGAHTGH HFQPVRKSPL
601 HDWAKKHGAV FVETGLWYRS SWFPRSGERT WRESVEREVL NVRKNAGLCD VSMLGKIEIT
661 GSDAAEFLNR VYCNAFLKLP VGKARYGLML REDGFIYDDG TTSRLEENRF FMTTTTAYAA
721 GVMNHLEFCA QVLWPQLDVR LASITDQWAQ MAIAGPKARM ILQKIVDEDI SDAAFPFLAA
781 KEVSLFGGAL HGCLFRISFS GELAYELAVP AGYGESIADA LLEAGKDHGI MPYGVETLSV
841 LRIEKGHVTH NEINGTIVPA DLGFGKMVSA GKPDFVGKAM LQREGLTAPD RPQLVGVVPL
901 DPQQSFRSGS HILAKGAAAT LENDEGYVTS SAYSPHVGST IALALVRNGR NRHGEEVLVW
961 SGLHGESTPA RLCNPVFFDP QNERLHV
//