LOCUS AEG55072.1 1059 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 double-strand break repair
protein AddB protein.
ACCESSION CP002781-3297
PROTEIN_ID AEG55072.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_3366"
/inference="protein motif:TFAM:TIGR02786"
/note="TIGRFAM: Double-strand break repair protein AddB;
KEGG: smd:Smed_3243 double-strand break repair protein
AddB"
/transl_table=11
/db_xref="InterPro:IPR014153"
BEGIN
1 MPGHPNVFTI PAGLPFLRTV AERLCNGELT PGFRYDPAQP LALAGVTIFV PTRRSARVLR
61 SEFVDLLGGR SAILPMIRAL GETDDDSGFF DAEVPAILDL APPLSGTARL IELGRLILAW
121 RNRLPQVVLD IHAESPLIAP ASPADAIWLA RNLAELIDAI ETEELDWDAL DGLDGGEHAL
181 WWQLTLAFLK IARTYWPERL AELKHSSPAR HRNAVLKAET QRIAAGKVSG PIIIAGSTGS
241 IPATAALIAA VKTLPNGTIV LPGLDGSMSD AEWRLIAGET SGSGTSARNP ASRTHPQYGF
301 HRLLKRMGIE LGDVPALASA ADDLDYRSAV LSRALLPADA TDVWMEARRS FDAERLLSAF
361 ADVALIEAAN EREEATAIAI ALRLALEADE ESQAALITPD RGLARRVGTE LARFGIEADD
421 SAGIPLSATP AGALARLLLE ATLRPDDPVA LVALLKHPLA RFGRTADDAR RAADVLELAA
481 LRGGTDAADV SALEAVLDKA LDRQKTDRHP PPWRAGIGPD DIAMARALAR RIASAVGPLS
541 SNLSADPQTG RHRSTVLPLS DWAERTGRAL EAAAIDEQGN LGALWASEAG EILATLLRGI
601 IETDGQMEAD GPQWCDILEA LAASEAVKPR SMRHPRVFIF GALESRLQSV DLVVLGGMNE
661 GTWPGQTSND PFLSRTMKAG IGLEPPERRI GQLAHDFQMA CGTRRLILSR SMRQGSAPTV
721 ASRWLQRLQA LGGERLTALL KANGADYLHW MRILDQGERQ PLSERPEPKP PAELQPRKYS
781 FSEVTRLRRD PYAVYARRIL RLEPIQPFNR DPGAAERGLL YHRIVDRFVK GGFDPAAREG
841 EEAMIRLTDE AFDEEKLPAH IDTIWRPRFQ AVGRAFLEWE RERRHGIVKS FTEVPAAMDL
901 GIGDIRLTGI ADRLDRLADG TIDIIDYKTG SSPSPKEARA LLDPQLALEA AALRAGAFRV
961 IGPAQPHSLR YVRLKPGSRF AVDTVNNEGA RSKETKSTGQ LADESLAELR KLLSALMSGR
1021 FGFASRLIVQ KQRDYGGEYD HLARVAEWAT ADGEDDDEE
//