LOCUS AEG55017.1 1595 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 NAD-glutamate dehydrogenase protein.
ACCESSION CP002781-3242
PROTEIN_ID AEG55017.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_3311"
/inference="protein motif:PFAM:PF05088"
/note="PFAM: Bacterial NAD-glutamate dehydrogenase; KEGG:
smd:Smed_3187 NAD-glutamate dehydrogenase"
/transl_table=11
/db_xref="InterPro:IPR007780"
BEGIN
1 MGVKHNPKRD RHIDAARAAG SRFGAETLPP EILFGGASND DLDRYTPEML ALTAAHARGE
61 LARWDGGKPQ VSVETVAGVA PGGIEVSIIA ITERNMPFLY DSVMGEVTST HRDIHLAIHP
121 ILVMEPGKPV KLFDPDEESA PEHRVSHIQI HLSRLTPLEA RSLSKRISDV LEQVHQAVHD
181 WPAMTALLDQ AMRELEDYNA SRKKSDRDEA LAFLRWLRDS NFTFLGMREY TYSGKGGRAT
241 VERGKGRGLG ILSNPDVRVL RQGKDAVLTT PEILAFLEGP DFLIVTKANV KSVVHRRAHM
301 DYIGIKRFDA SGNVVGELRI VGLFTSTAYT RQASEIPLLR HKIEKIVDHF GYDPQSHSGK
361 TLANTLEAYP RDDLFQIDVG LLAAFCEQIN ELGDRPRVRV LPRIDHFDRF VSVIVFVPRE
421 QYDSDVREKI GDYLKTVYDG RVSAYYPAFP EGGLARVHFI IGRSGGKTPR VPQAKLEEAV
481 RAIVTRWIDR FNLLARKEGT EISVGEAYQA AFTPAEAYAD LGDIAACTAG DPIRISFYHR
541 HQERPDTLEL KIFHADTPVS LSRRVPLLEN LGFRVISEQT YDIGVHVHGD EPREVVLHDM
601 ELIHRDGHTL NLARIGPALE EAFLAAWNGT TEDDNFNRLV LLAGLTAREI TVLRAYARYL
661 RQAGITYSQG YIADTLNKYP TIAADIFRLF STRMDPTTEV KARTKKCSAL LTGIEEALSA
721 VPSLDEDRIL RRYVNAVQST LRTNYFQKDA EGRPRAVLAF KLDPKQLEGL PEPRPFREIF
781 VYGTEVEGVH LRFGKVARGG LRWSDRAQDY RTEVLGLVKA QQVKNAVIVP VGAKGGFYPK
841 QLPVGGSRDE IFKAGTEAYK TYIRTLLSVT DNIIGQEVVP PEDTLRLDGD DPYFVVAADK
901 GTATFSDTAN ALAQEADFWL DDAFASGGSA GYDHKKMGIT ARGAWEAVKR HFREMDVDIQ
961 TTPFTVAGVG DMSGDVFGNG MLLSEKIRLI AAFDHRDIFI DPEPDIDLSF GERKRMFALP
1021 RSSWQDYDRK ALSPGAMIIS RSEKLVTLTP EAMAAIGIDK PKATPFEIMS AILKSPVDLL
1081 WFGGIGTYVR GANETDAEVG DRANDAIRVS AEDVRARVIG EGANLGVTQK GRIAFSLNGG
1141 RCNSDAIDNS AGVNSSDVEV NIKIALASAM RDDRLTRPKR NTLLASMTDE VGHLVLRNNY
1201 QQSLAISLTE MQGLANRTPL ARLMARLEAD GHLNRKVETL PTDQAMSERY QAGRPLTRPE
1261 IGVLLSYAKL VLFDELIVSE IPDDPYFTAT LERYFPAKMR KAYAGDIHGH RLRREIIATV
1321 LANETINRGG PAFVSTLTDA TGFLSADVVK AAVLALDGFD LPRIYGEIDA LDNRISGAIQ
1381 NRLYHEVGRI FALVAERALR TRASEGSVAE AVARLRDGLQ KLRGTMRAAI SREGAEEARL
1441 RAAGFIENGV SAKLAEEIAE LSLMTLVPEI MQIATVTGEP LSRTAQAYFT VTESLRINRL
1501 LAAADRVPAT EQFESMALSR AVGDIGTARR DITIAALVEH KGDRNPVLAW QDRDRQRVAT
1561 VGDQLRLLTE KGETTLAKVT VAAGLLSDLA RGWTK
//