LOCUS AEG54985.1 2870 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 Protein of unknown function
DUF2329 protein.
ACCESSION CP002781-3210
PROTEIN_ID AEG54985.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_3278"
/inference="protein motif:PFAM:PF10091"
/note="PFAM: Protein of unknown function DUF2329;
Glycosyltransferase 36 associated; Glycosyltransferase 36;
Putative carbohydrate binding; Protein of unknown function
DUF3131; KEGG: smd:Smed_3155 glycosyltransferase 36"
/transl_table=11
/db_xref="InterPro:IPR009342"
/db_xref="InterPro:IPR010383"
/db_xref="InterPro:IPR010403"
/db_xref="InterPro:IPR019282"
/db_xref="InterPro:IPR021478"
BEGIN
1 MTVSRNVPAP SASSGSQPHR QNNDNRADQS RVEPESVPML QNTTQSNLPR EPEAKQIDYN
61 DSIRSTYFSI DDLRACGASL AEKGTSALPG FFPFEFRARH RENEKEILRV YRATAADVEA
121 GASITPAAEW LLDNHHVVEE AIQEVRRDFP RRFYRQLPTL SVSGTVIPRT MALAWLYVAH
181 THSTVTRESI TAMVEGFQEH ETLKIGELWA LPSILRFVLI ENLRRIAIRV ERSRGMRRKA
241 NEVADQLIRL NDPEGCRTLL VESEALAADN TFIAQLLYRM RDGSQSSGAV IAWIEERLER
301 RGTDVEEALV AEQNRLSSGN ATMSNIIRSL REIDDTDWAV WFESVSKIDA TLREGSDYAA
361 LDFGSRNTYR DTIEKLARRS GHSEHEVTEI AIEMVEEAKA AAAVEAPLQE PNVGSFLVGK
421 QRLALEKRIG YSPSIFQHLI RSVRKLDWFA IAGPNILLTI LAMIVVYAFV SPMDIPSGAK
481 LIMLLLFALP ASEGAMGLFN TVFTLFAKPS RLVGYEFLDG IPEDARTLVV VPCLIAKRDH
541 VDELVRNLEV HYLANPRGEI YFALLSDWAD SKSEEAPADT DVLEYAKREI ASLSARYAYD
601 GKTRFFLLHR RRLYNEAEGV WMGWERKRGK LHELNLLLRG DRDTSFLQGA NMVPEGVQYV
661 MTLDSDTRLM RDAVTKLVGK LYHPINRPVV NPRTQEVVTG YSLLQPRVTP SLTTGSEASA
721 FQRIFTINRG IDPYVFTVSD VYQDIAGEGS FTGKGLYHVD AFEAALKSRI EENAVLSHDL
781 LEGSYARCAL VTDIELVEDF PIRYEVEMSR QHRWARGDWQ LLPYIFNPKN GLSMLGRWKM
841 YDNLRRSLIP VAWLAASVMG WYYMEPTPAL IWQLVLIFSL FVAPTLSLIS GIMPRRNDIV
901 ARAHLHTVLS DIRAANAQVA LRIVFIAHNA AMMADAIVRS LYRTFVSRKL MLEWRTAAQV
961 QSAGHGSIGD YFRAMWTAPA LALVSLALAA ISDTGLPFIG LPFALIWAAS PAVAWFVSQS
1021 AETEDQLVVS EEAIEEMRKI ARRTWRYFEA FVTAEQNFLP PDNFQETPQP VLAERTSPTN
1081 IGVYLLSVMS ARSFGWIGFE ETITRLEQTI ATIDRMPKYR GHLFNWYRTR GLEPMEPRYV
1141 SSVDSGNLAG HLIAVSSMCR EWAEAPSAHV QGNLDGIGDV AAILKEALNE LPDDRKTVRP
1201 LRRLVEERIA GFQNALAAVK REREFASIRV INLAVLARDM HKLTVNLDHE VRTVQSGEVA
1261 TWAGSLVAAC EAHIADGVFD LGAIEALRQR LLVLKERARD IAFSMDFSFL FRPERRLLSI
1321 GYRVNANELD EACYDLLASE ARLTSLFAIA KGDLPTEHWY KLGRPIVPIG ARGALVSWSG
1381 SMFEYLMPPL VMQERQGGIL NQTNNLVVQE QINHGRRLGT PWGISEAAFN ARDHELTYQY
1441 TNFGVPTLGL KRGLGQNAVV APYASILACM YDPKSALANL ARLREVGALG AYGYHDAVDF
1501 TPTRVPEGQK CAVVRNYYAH HHGMSVAAVA NVVFNGQLRE WFHADPVIEA AELLLQEKAP
1561 RDIPVMAAKR EPEALGKGQA DLLRPEVRVV EDPINQDRET VLLSNGHYSV MLTATGAGYA
1621 RWNGQSVTRW TPDPVEDRTG TFIFLRDTVT GDWWSATAEP RRAPGEKTVT RFGDDKAEFV
1681 KTVGDLTSEV ECIVATEHDA EGRRVILLNT GTEDRFIEVT SYAEPVLAMD DADSSHPTFS
1741 KMFLRTEISR HGDVIWVSRN KRSPGDPDIE VAHLVTDNAG SERHTQAETD RRRFLGQGRT
1801 LAEAAAFDPG ATLSGTDGFT LDPIVSLRRV VRVPAGKKVS VIFWTIAAPD REGVDRAIDR
1861 YRHPETFNHE LIHAWTRSQV QMRHVGITSK EAASFQMLGR YLVYPDMHLR ADAETVKTGL
1921 ASQSALWPLA ISGDFPIFCL RINDDGDLGI AREALRAQEY LRARGITADL VVVNERASSY
1981 AQDLQHTLDS MCENLRLRGL SDGPRQHIFA VRRDLMEPET WSTLISASRA VFHARNGTIS
2041 DQIARATSLY SKSSEKKEEG AEMLLPVIRE ADARTAVELD GGDLDFWNGF GGFAEDGREY
2101 AVRLRGGEAT PQPWINVISN EQFGFHVSAE GAAFSWSRNS RDYQLTPWTN DAVVNRPGEA
2161 IFVRDMASGA VLTPYAALSR RKSALFETRH GLGYSRFLST QDELEIEAMH TVHRTLPAKL
2221 VRLTIRNRSS AARKLRVYGY AEWVLGNNRS RTAPFVLSEW DESAKTLVAT NPYSIDYPGR
2281 CAFFASDGDI AGYTASRREF LGRAGGILAP QAVISGAELT GSTDVDGDAC AALATDITVE
2341 AGVERQVTFF LGDADNPDQV RAVLEELRAD SFGAALEAAK AFWGDFTGVV KVETPDRAFN
2401 HMINHWLPYQ ALGCRIMARS AFYQASGAFG FRDQLQDTLA FLIHRPALAR AQILNAAARQ
2461 FVEGDVQHWW LPGTDAGVRT MISDDVVWLA HAVAHYCAVT GEEDILKEKV PFITGPALEE
2521 GQHDSFYKPD VADEVGDVYE HCARALDLAI HRTGANGLPL ILGGDWNDGM NRVGEAGEGT
2581 SVWLGWFLAG TLRAFLPYAR ARKDKPRVAL WERHLEALKD ALEQAGWDGD YYRRGYYDDG
2641 TPLGSAENGE CRIDSIAQSW STLSGEGDKE RSLRAMDAVM AELVDPEKRI VRLFTPPLET
2701 TKQDPGYIKA YPPGVRENGG QYTHAATWVV LAFAAQERAE EAWRTFRMLN PVSHALSQVD
2761 AEHYRVEPYV VAADIYGEGA LAGRGGWTWY TGSAGWLYRA GVEGILGIRK RGDKLLIRPV
2821 LPSEWPGYSA EVRVNGTTHR ISVSRDSKSG EPVVSVNNSV TKNAHEGVLL
//