LOCUS AEG54933.1 896 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 aconitate hydratase 1 protein.
ACCESSION CP002781-3158
PROTEIN_ID AEG54933.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_3226"
/EC_number="4.2.1.3"
/inference="protein motif:TFAM:TIGR01341"
/note="TIGRFAM: Aconitase/iron regulatory protein 2; KEGG:
smd:Smed_3083 aconitate hydratase; PFAM:
Aconitase/3-isopropylmalate dehydratase large subunit,
alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase
small subunit, swivel"
/transl_table=11
/db_xref="GO:0008664"
/db_xref="InterPro:IPR000573"
/db_xref="InterPro:IPR001030"
/db_xref="InterPro:IPR006249"
BEGIN
1 MSKSLDSFNC RSTLTVNGVD YVYYSLPKAE ANGLAGISKL PYSMKVLLEN LLRNEDGRSV
61 TKKDIENIAA WLGDKGTAEN EIAYRPARVL MQDFTGVPAV VDLAAMRDAM VSLGGDPEKI
121 NPLVPVDLVI DHSVIVDEFG TPTAFARNVE LEYQRNGERY RFLKWGQQAF KNFRVVPPGT
181 GICHQVNLEY LGQAVWTREE DGEVTAYPDT CVGTDSHTTM INGLGVLGWG VGGIEAEAAM
241 LGQPVSMLLP EVIGFKLTGK LKEGVTATDL VLTVVQMLRK KGVVSKFVEF FGPGLDNMTL
301 ADRATIGNMG PEYGATCGFF PVDAETINYL TISGREEQRI ALVEAYSKAQ GMWREGDGSE
361 LVFTDTLELD LGDVVPSMAG PKRPEGRIAL ENIASGFAAA LDNDYKKPGQ LANRYAVEGT
421 DYDLGHGDVA IAAITSCTNT SNPSVLIAAG LLARNAVAKG LKTQPWVKTS LAPGSQVVAE
481 YLSKSGLQTD LDKLGFNLVG FGCTTCIGNS GPLPTEISKT INDKGLIAAG VLSGNRNFEG
541 RISPDVQANY LASPPLVVAY ALAGSVQKDL TKEPIGEDRD GQPVYLRDIW PTSQEIQDFI
601 FRYVTRELYA TKYADVFKGD ANWQAVQVPA GQTYAWDEGS TYVQNPPYFV GMGKKGAGIS
661 DIKNARVLGL FGDKITTDHI SPAGSIKAAS PAGAYLLEHG VGIADFNQYG TRRGNHEVMM
721 RGTFANIRIR NHMLGPNGKE GGYTIHYPSK EEMSIYDAAM QYKEEGVPLV IFAGVEYGNG
781 SSRDWAAKGT NLLGVKAVIA QSFERIHRSN LVGMGVVPFV FEEGMTWESL GLKGDEVVTI
841 ENLANVQPRE KRVAKITYGD GSVKEVPLIC RIDTLDEVTY VNNGGILQTV LRDLAA
//