LOCUS AEG54874.1 1116 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 Error-prone DNA polymerase protein.
ACCESSION CP002781-3099
PROTEIN_ID AEG54874.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_3167"
/EC_number="2.7.7.7"
/inference="protein motif:HAMAP:MF_01902"
/note="KEGG: smd:Smed_3021 DNA polymerase III, alpha
subunit; PFAM: Bacterial DNA polymerase III, alpha
subunit; PHP, C-terminal; Nucleic acid binding, OB-fold,
tRNA/helicase-type; TIGRFAM: DNA polymerase III, alpha
subunit; HAMAP: DNA polymerase, error-prone; SMART:
Polymerase/histidinol phosphatase, N-terminal"
/transl_table=11
/db_xref="InterPro:IPR003141"
/db_xref="InterPro:IPR004013"
/db_xref="InterPro:IPR004365"
/db_xref="InterPro:IPR004805"
/db_xref="InterPro:IPR011708"
/db_xref="InterPro:IPR023073"
BEGIN
1 MSADAVFCEL GARTNFSFLE GAAPAEEMVV FAKKAGLAGL GIADRNSVAG VVRAHAKAKV
61 EGYPFQPGAR LVFADGTPDI LAYPKNRRGW GHLCRLLSAG NLRSKKGDCT LHLADLLEWQ
121 EELLLIVMQG EGRPEPESLE VLLGTLKEHA GNRLYLGLAP HYDGFDRHDF AVLAAIARKA
181 GIGLLATNDA LYHDPHYRPL ADVVTSIREH VPIAGAGFLL QKNAERHLKG PREMARLFSD
241 YPEAIANTRK FFRELAFSLD ELSHQYPDEN ADGETPAESL RRLVAEGAAE RYPEGVPEKV
301 MRQIDYELEL IHDKKYEPYF LTVHKLVKFA RSVNILCQGR GSAANSSVCF CLGITDVDPQ
361 KFTLLFDRFL SKDRDEPPDI DVDFEHERRE EVIQYIYRTY GKEHAGLTAA VISYRSRSAG
421 REVAKAFGLS EDVQSALVSS IWGWGTSPFT EEQAKGAGLD AADPLTRRVL AYASLLMNFP
481 RHLSQHVGGF VITRDRLDEV VPIMNTAMPD RYMIEWDKDD LDELKILKVD VLALGMLTCL
541 AKGFKLLEAH YGEPITLAEI YQDHRDAVYD MICRADTVGV FQIESRAQMS MLPRLQPREM
601 YDLVIEVAIV RPGPIQGNMV HPYLKRREAQ RRGEAVVYPS PELKAVLERT LGVPLFQEQA
661 MQIAITAAGF SPSEADRLRR AMATFKRTGT IHTFERKMVE GMVANDYERE FAERCFNQIK
721 GFGEYGFPES HAASFASLVY ASAWLKTYYP DIFCAALLNA QPMGFYAPAQ LVRDAREHGV
781 RMLPVDINHS DWDALLEGEG AFDKNAVHPR HASMREVIKT RKAVRLGFRL VKGLKQTDMK
841 ALVARRGEGY RSVHDLWLRS GLSRSVLERL ADADAFRSIG LDRRAALWAV KALDEQSAVE
901 RLPLFEGAGS DDLQIEPKVA LPDMPAGEQV IHDYRTLTLS LKAHPVSFMR EDFSRMGILR
961 SRDLAATATG RWVTVAGLVL VRQRPGSANG VIFMTIEDET GIANIIVWEK TFQKYRRQVM
1021 GSRLVKVRGR LQNQSGVIHV VADHLEDITP MLGLLRREAR RFGVNDRADG ALRPSADARE
1081 KKKLRQLRLG LPARAAPEGE AAAQVAEVMP KGRNFH
//