LOCUS AEG54758.1 1869 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 protein of unknown function
DUF490 protein.
ACCESSION CP002781-2983
PROTEIN_ID AEG54758.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_3051"
/inference="protein motif:PFAM:PF04357"
/note="PFAM: Protein of unknown function DUF490; KEGG:
smd:Smed_2888 hypothetical protein"
/transl_table=11
/db_xref="InterPro:IPR007452"
BEGIN
1 MNQVTLFLRS ALRYFFAALG TLVVVLLLLV GFLGFTVPGA RVVAWAIEKY AATPDQIVRI
61 ADPGALLTGD FTAGTITLFD GEGIYAEVRD LSVDWSPAEL FSLRFDSSRI SAGSVRVERL
121 PVPSTETREV RSTFALPVDV KIDAFDLKEI VLGKQIAGED HFLTARGKVD ATNSSIALVL
181 DAAERDRPDA RATADLVFNP AGNQLKLEAE LAEPKAGLLA RLLRLPGEPA VNMTVTGQGP
241 LSDWAGSGTV TLDGSEILRL DGQHVLAAEG MHMLTVSGGG AFATLMPPAF RPLFEGESRI
301 DLTAAFDGTS KVRIDAGKVS TGAMTLDVSG TVDSRGENNL QARLAGTSGP FDFRWPLKDG
361 ELQALVDTAN LSLIGDGQSA ILDIAANVPS VNLPQGRLGG IRLSARSDAF NLESRSGPLK
421 TTVEVGESRF ANAELDRAVQ APLKLDGTIA VTPEDIRFDP LEIESASIGG TVTGSFDRTE
481 TTLEAAFKVF AVREVLPPGL ADKFDRTIAL AGNAVVEQDG SVRLSELDIK SGAVDASGSV
541 ALAGSTLSAD IQGTLPELGR LLADAEGSAA FHAVASGPLN KLGIEAEITS SGATLAGRTL
601 DDLVVNADAT VTPGSPEAKL TATGTLDGQA IDVRADVVTR DGRTSIPTLE AKIGDNRLIG
661 AMELTADFKP NGTIDFNLPD LGLLAAMAGQ QASGDLAGSA TIRTADGVTS LALTARGESI
721 RRDALTVAKP VVDVTVANLA RLAIKGGVRA ESVVQGENRL TDIDIAFEQE AERTGFSVGA
781 EFEGAPLAAT GDLASRDGRT EISLASASAT ARRIPLQLAR PSVIAIENGV VHIDGLTIQA
841 STGTVAVTGT AGETLDISAD ISDLPATLIH TVAPTLGAEG KITGKVDIAG NGAAPVVRYD
901 LTWSGASIAS VRSAGITAED LSAKGTVTVA EDSIRLDPLA IERAGFRGDV TASLDRADNT
961 AEANFQFVAE PAVLPPGIGA KFDAPITVSG KVETGAGGTV ELSALEVKSD TVNATGSAAL
1021 AEGALTAEIA GALPDLGKLL AEAEGKAAFS ADLSGPLDAL GVKAEVTSSG AVLAGRTLSD
1081 FVITADATAK PGSPEAKLTA TGALDGQAID VKAEVVSKDG RTSIPTLEAK VGDNRLTGAI
1141 DLTADFKPEG TIDFNLPDLG LLAAMAGEKV SGDLSGSAAI RTANGVTSLS LKANGSGIKR
1201 GDLTIAKPVA DISIADVAAL AVRGSVRAEN VAQGQNRVTG LNLTFDQQGG RTGFTVDGRY
1261 DGGPLSAKGD MVASGGRTEV RLASFAATPK RIPLKLARPT IVAIENGTVL LDALTIEASK
1321 GTITVAGSAG PTLDISARLN ALPAALINTF APTLGAEGTI AGTVDVGGTA AAPVVVYDLR
1381 WSGASVAAAR GAGVSSLEIA AKGRFADNRV TVDATVSGPG DLSFRGGGNV ELGGNMPISM
1441 KFAGDVPFAL LANIMAEQGF TLTGSAKVDL SLSGPAKAPQ IAGTVSTAGA RLVDVRRNLA
1501 LNDLTANVAL DGRQATISRL SANLASGGSI EASGTVGIVP GSGFPANLRI RLNNATYVDG
1561 TLFTANLAGD LTLNGPLVST PVLGGRLTIR RAAITIPERL PASLSQIDIK HRNAPPRVRQ
1621 MTRDLRRDTS AGTEASGAIA FDLAVSSPGQ FFVRGRGIDA ELGGDLTIRG TAVQPIVSGG
1681 FDMRRGRLEI LGKRLTFTDG HIGFGGDLIP TLDLDATSSA GSTTITVNVA GPANNPTVTF
1741 SSSPALPQDE ILAQLIFNRS LNNLSAFQIA QLASAVGQLA GGGSTSLLDG LRNKLGVDDL
1801 DITTDESGGA QVRAGKYLND RTYLELQQGS DSASSKAVIN LDIGRGVKLK GEAAGDGSAA
1861 GGIFFEREY
//