LOCUS AEG54741.1 1257 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 methionine synthase protein.
ACCESSION CP002781-2966
PROTEIN_ID AEG54741.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_3034"
/EC_number="2.1.1.13"
/inference="protein motif:TFAM:TIGR02082"
/note="TIGRFAM: 5-methyltetrahydrofolate--homocysteine
methyltransferase; KEGG: smd:Smed_2870 B12-dependent
methionine synthase; PFAM: Homocysteine
S-methyltransferase; Pterin-binding; Methionine synthase,
cobalamin (vitamin B12)-binding module, cap; Cobalamin
(vitamin B12)-binding; Vitamin B12-dependent methionine
synthase, activation domain"
/transl_table=11
/db_xref="GO:0008270"
/db_xref="GO:0008705"
/db_xref="GO:0031419"
/db_xref="InterPro:IPR000489"
/db_xref="InterPro:IPR003726"
/db_xref="InterPro:IPR003759"
/db_xref="InterPro:IPR004223"
/db_xref="InterPro:IPR006158"
/db_xref="InterPro:IPR011822"
BEGIN
1 MSAADALFGN VSPKPDGSEV FRQLAQAAAE RILIMDGAMG TEIQQLGFVE DHFRGERFGG
61 CACHQQGNND LLTLTQPKAI EDIHYHYAIA GADILETNTF SSTRIAQADY GMEDMVYDLN
121 RDGARLARRA AKRAEAEDGR RRFVAGALGP TNRTASISPD VNNPGYRAVS FDDLRLAYAE
181 QVRGLIDGGA DIILIETIFD TLNAKAAIFA TQEVFAEKGV RLPVMISGTI TDLSGRTLSG
241 QTPTAFWYSV RHADPFTIGL NCALGANAMR AHIDELSAVA DTLVCAYPNA GLPNEFGRYD
301 ESPEQMAAQV EGFARDGLVN IVGGCCGSTP AHIRAIAEAV AKYPPRRVPE IDRRMRLSGL
361 EPFTLTDEIP FVNVGERTNV TGSAKFRKLI TAGDYAAALD VARDQVANGA QIIDVNMDEG
421 LIDSKQVMVE FLNLVASEPD IARVPVMIDS SKWEVIEAGL KCVQGKALVN SISLKEGEAA
481 FLHHARLVRA YGAAVVVMAF DEKGQADTKT RKVEICRRAY RLLTEEVGFP PEDIIFDPNI
541 FAVATGIEEH NNYGVDFIEA THEIIAALPH VHVSGGVSNL SFSFRGNEPV REAMHAIFLY
601 HAIQAGMDMG IVNAGQLAVY DAIDPELRET CEDVVLNRRA DSTERLLEIA ERYRGKGGSQ
661 GKEKDLAWRE WPVEKRLEHA LVNGITEFIE ADTEEARLAA ERPLHVIEGP LMAGMNVVGD
721 LFGSGKMFLP QVVKSARVMK QAVAVLLPHM EEEKRANGGG EARESAGKIL MATVKGDVHD
781 IGKNIVGVVL ACNNYEIIDL GVMVPSAKIL EVAREQKVDI VGLSGLITPS LDEMAHVASE
841 LEREGFDVPL LIGGATTSRV HTAVKINPRY SLGQTVYVTD ASRAVGVVSS LLSPEVRDSY
901 KKTVRAEYLK VADAHARNEA EKRRLPLSQA RANAFRIDWD AHQPKVPSFL GTRVFEGWDL
961 AELARYIDWT PFFQTWELKG VFPKILDDER QGAAARQLFE DAQAMVEKIV AEAWFAPKAV
1021 IGFWPAASMG DDVRLFADEV REAELATFFT LRQQMVKRDG RPNVALADFV APAASGKRDY
1081 VGGFVVTAGI EEVAIAERFE RANDDYSSIM VKALADRFAE AFAERMHEYV RKELWGYAPD
1141 EAFTPQELIA EPYAGIRPAP GYPAQPDHTE KETLFRLLDA EAAIGVRLTE SYAMWPGSSV
1201 SGLYVGHPDS YYFGVAKIER DQVEDYADRK RMSVREVERW LSPILNYVPM PETEAAE
//