LOCUS AEG54670.1 876 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 diguanylate cyclase/phosphodiesterase
with PAS/PAC and Chase sensor(s) protein.
ACCESSION CP002781-2895
PROTEIN_ID AEG54670.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_2963"
/inference="protein motif:TFAM:TIGR00254"
/note="TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM:
Diguanylate phosphodiesterase, EAL domain; Diguanylate
cyclase, predicted; CHASE; PAS fold-3; KEGG: smd:Smed_2805
diguanylate cyclase/phosphodiesterase with PAS/PAC and
CHASE sensor(s); SMART: Diguanylate phosphodiesterase, EAL
domain; Diguanylate cyclase, predicted"
/transl_table=11
/db_xref="GO:0004871"
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR000160"
/db_xref="InterPro:IPR001633"
/db_xref="InterPro:IPR006189"
/db_xref="InterPro:IPR013655"
BEGIN
1 MSPLSRFLTP SYLPAVIAAL VVVVAGVLAD NQNRIVSEAR LRSEVADALN PIRSSLESSV
61 NGNIQLVRGL IATIETEPDM QQQRFGELAR SVFGAGSQLR NIAAAPGLVV AMVYPLTGNE
121 KAIGLDYRTN DKQRSSVMRA VASGEMVLAG PVDLVQGGRG LIGRFPVTTG PEGGRRFWGV
181 VSAVIDVDRL YRDSGLSSPA LDIAIAGRDG TGRGGPHFFG DPAIFENAPV EMSVSLPGGS
241 WRMAAIPKGG WPTTPQNAWQ VRFLIAFGGL MIVAPMIVAG RLMAERQANF RALRQSKDQL
301 QELSHRLRIA LDTSKIGIWE LDVDSGTLLW DSRMKELYGI GSSMREVYED WRNTLHPDDL
361 ARAEAEFAGT LATGGAYNTE FRIRLPDGEV RHIRAIGSTY AGTNGNRKIV GVNWDVTADV
421 KTRATLSEAK RLAEAHSAEL EAARHRMEFN ALHDPLTGLP NRRFLDQILF DRSRRADAKA
481 KISIFHIDLD RFKQINDTMG HAAGDEILKH AASLLRDNAR QDDFVARIGG DEFVIIRASG
541 GCDEDAALAS RVIEAMSVPV RYEDQECRIG VSIGIAAQTD AADDLSQVLV NADIALYEAK
601 RRGRNRHETF TGALKTAVLQ TKQTADEILR GLEQNEFVAY FQPQFCPSSL DIIGVEALAR
661 WDHPTKGLLG PHAFLKTAED INVVAAIDQK ILEQALFQIY RWEANGIYVP KVSVNLSYPR
721 LRDEGLIARL EELSIPEGRL SFELLESISF DENDVTVMSN IRRIKELGID IEIDDFGTGY
781 ASILSLLKLT PRRLKIDRQL VLPILSSPAE RRLVASIIDI GTSLGIEVIA EGVETLEHAR
841 ILKEMECHGL QGYAFARPMN ANDLATFVFE RRWRAA
//