LOCUS AEG54625.1 773 aa PRT BCT 08-JUN-2015 DEFINITION Sinorhizobium meliloti AK83 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) protein. ACCESSION CP002781-2850 PROTEIN_ID AEG54625.1 SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83) ORGANISM Sinorhizobium meliloti AK83 Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium. REFERENCE 1 (bases 1 to 3820344) AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A. TITLE Replicon-dependent bacterial genome evolution: the case of Sinorhizobium meliloti JOURNAL Genome Biol Evol 5 (3), 542-558 (2013) PUBMED 23431003 REFERENCE 2 (bases 1 to 3820344) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83 JOURNAL Unpublished REFERENCE 3 (bases 1 to 3820344) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4086303 Source DNA and organism available from Emanuele G. Biondi (emanuele.biondi@unifi.it) Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sinorhizobium meliloti AK83 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Host, Plant root, Root nodule, Soil num_replicons :: 5 ref_biomaterial :: Missing biotic_relationship :: Symbiotic trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05780 Current Finishing Status :: Finished Funding Program :: DOE-CSP 2009 Source of Isolate :: Biondi, Emanuele (Universita di Firenze) Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C Gram Staining :: Gram- Symbiotic Relationship :: Mutualistic Diseases :: None Phenotypes :: Nitrogen cycle, Streptomycin resistant, Symbiotic ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Sinorhizobium meliloti AK83" /mol_type="genomic DNA" /strain="AK83" /db_xref="taxon:693982" /chromosome="1" /collected_by="Emmanuele Biondi" protein /locus_tag="Sinme_2918" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; KEGG: rhi:NGR_c29150 putative transmembrane sensory box GGDEF/EAL protein; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS" /transl_table=11 /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR013767" BEGIN 1 MTRNERGALP ADIYLSFVSS LYQNRGTLVI GMLSHVVTFL LVFLKTSDTL YLGCTVAIVV 61 LWIVRNLDMM RFDQLDLSGA DYAAIRMWEN RYIVGGVAVT LTCGIACGYA IAVTRDVFSQ 121 VACVSVTLAS MISLVGRNYG SERAVLLLSS SACLPMMIGA LSLGDPFMAV LAVLIVPFIL 181 TTWMMANNVR GYLFEKILAA RDENVLAALE TKTIAGQFDA ALNNMTHGLF MLDDRHRIVV 241 ANERACELLH LGDKAQLKGW LLGDVLERGS DALALDPERS DSIARQLDLL IEGKRSRALV 301 TISEELLLEF SANRRENGEI VLIFEDVTAR VQAERQVLQM VRFDTLTGLP SRDYFAELTH 361 NAVAAGTAHD RDIGLLLVDI AEFKHVNDTR GHVAGDKLLQ AIADRLKGLA GSEAIAARLM 421 GDEFVVFFHN RVGRSGLEER IRAVHAKLHG TYMADGFTFN MAMNAGFVIV RKSEFRLEEL 481 QIKADLALSE AKARNNGGCT AFEAEMEGRY LDRQKLKSDL REAIGRGDLS LAYQPMFTPD 541 GSRVVSCEAL ARWTHPERGP VPPDIFIQLA EEMGLVTDIT RFVVRHACRD CLTWPAEVAV 601 SVNLSVLDLH GDEIVAIVAE ALAESGLNPA RLHLEVTESC LMDEPVKVQA VLRELRERGM 661 AIAIDDFGTG YSSLSYLDAL PVSIIKVDRS FVRDIHVNSR RFKLLLGTVN LARALELKAV 721 VEGVETAEQL QLINEHNCAD LIQGFVFAAP MPASAVAVLC GHGMPEPVAE RTA //