LOCUS       AEG54625.1               773 aa    PRT              BCT 08-JUN-2015
DEFINITION  Sinorhizobium meliloti AK83 diguanylate cyclase/phosphodiesterase
            with PAS/PAC sensor(s) protein.
ACCESSION   CP002781-2850
PROTEIN_ID  AEG54625.1
SOURCE      Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
  ORGANISM  Sinorhizobium meliloti AK83
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE   1  (bases 1 to 3820344)
  AUTHORS   Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
  TITLE     Replicon-dependent bacterial genome evolution: the case of
            Sinorhizobium meliloti
  JOURNAL   Genome Biol Evol 5 (3), 542-558 (2013)
   PUBMED   23431003
REFERENCE   2  (bases 1 to 3820344)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
            Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
            Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
            Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 3820344)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
            Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
            Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
            Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
            Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT     URL -- http://www.jgi.doe.gov
            JGI Project ID: 4086303
            Source DNA and organism available from Emanuele G. Biondi
            (emanuele.biondi@unifi.it)
            Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Annotation done by JGI-ORNL and JGI-PGF
            Finishing done by JGI-LANL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. it is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            
            ##MIGS-Data-START##
            investigation_type       :: bacteria_archaea
            project_name             :: Sinorhizobium meliloti AK83
            collection_date          :: Missing
            lat_lon                  :: Missing
            depth                    :: Missing
            alt_elev                 :: Missing
            country                  :: Missing
            environment              :: Host, Plant root, Root nodule, Soil
            num_replicons            :: 5
            ref_biomaterial          :: Missing
            biotic_relationship      :: Symbiotic
            trophic_level            :: Missing
            rel_to_oxygen            :: Aerobe
            isol_growth_condt        :: Missing
            sequencing_meth          :: WGS
            assembly                 :: Newbler v. 2.3 (pre-release)
            finishing_strategy       :: Finished
            GOLD Stamp ID            :: Gi05780
            Current Finishing Status :: Finished
            Funding Program          :: DOE-CSP 2009
            Source of Isolate        :: Biondi, Emanuele (Universita di
                                        Firenze)
            Cell Shape               :: Rod-shaped
            Motility                 :: Motile
            Sporulation              :: Nonsporulating
            Temperature Range        :: Mesophile
            Temperature Optimum      :: 25 - 30C
            Gram Staining            :: Gram-
            Symbiotic Relationship   :: Mutualistic
            Diseases                 :: None
            Phenotypes               :: Nitrogen cycle, Streptomycin resistant,
                                        Symbiotic
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Finished
            Current Finishing Status :: Finished
            Assembly Method          :: Newbler v. 2.3
            Genome Coverage          :: 30x
            Sequencing Technology    :: 454/Illumina
            ##Genome-Assembly-Data-END##
FEATURES             Qualifiers
     source          /organism="Sinorhizobium meliloti AK83"
                     /mol_type="genomic DNA"
                     /strain="AK83"
                     /db_xref="taxon:693982"
                     /chromosome="1"
                     /collected_by="Emmanuele Biondi"
     protein         /locus_tag="Sinme_2918"
                     /inference="protein motif:TFAM:TIGR00254"
                     /note="TIGRFAM: Diguanylate cyclase, predicted; PFAM:
                     Diguanylate phosphodiesterase, EAL domain; Diguanylate
                     cyclase, predicted; PAS fold; KEGG: rhi:NGR_c29150
                     putative transmembrane sensory box GGDEF/EAL protein;
                     SMART: Diguanylate phosphodiesterase, EAL domain;
                     Diguanylate cyclase, predicted; PAS"
                     /transl_table=11
                     /db_xref="InterPro:IPR000014"
                     /db_xref="InterPro:IPR000160"
                     /db_xref="InterPro:IPR001633"
                     /db_xref="InterPro:IPR013767"
BEGIN
        1 MTRNERGALP ADIYLSFVSS LYQNRGTLVI GMLSHVVTFL LVFLKTSDTL YLGCTVAIVV
       61 LWIVRNLDMM RFDQLDLSGA DYAAIRMWEN RYIVGGVAVT LTCGIACGYA IAVTRDVFSQ
      121 VACVSVTLAS MISLVGRNYG SERAVLLLSS SACLPMMIGA LSLGDPFMAV LAVLIVPFIL
      181 TTWMMANNVR GYLFEKILAA RDENVLAALE TKTIAGQFDA ALNNMTHGLF MLDDRHRIVV
      241 ANERACELLH LGDKAQLKGW LLGDVLERGS DALALDPERS DSIARQLDLL IEGKRSRALV
      301 TISEELLLEF SANRRENGEI VLIFEDVTAR VQAERQVLQM VRFDTLTGLP SRDYFAELTH
      361 NAVAAGTAHD RDIGLLLVDI AEFKHVNDTR GHVAGDKLLQ AIADRLKGLA GSEAIAARLM
      421 GDEFVVFFHN RVGRSGLEER IRAVHAKLHG TYMADGFTFN MAMNAGFVIV RKSEFRLEEL
      481 QIKADLALSE AKARNNGGCT AFEAEMEGRY LDRQKLKSDL REAIGRGDLS LAYQPMFTPD
      541 GSRVVSCEAL ARWTHPERGP VPPDIFIQLA EEMGLVTDIT RFVVRHACRD CLTWPAEVAV
      601 SVNLSVLDLH GDEIVAIVAE ALAESGLNPA RLHLEVTESC LMDEPVKVQA VLRELRERGM
      661 AIAIDDFGTG YSSLSYLDAL PVSIIKVDRS FVRDIHVNSR RFKLLLGTVN LARALELKAV
      721 VEGVETAEQL QLINEHNCAD LIQGFVFAAP MPASAVAVLC GHGMPEPVAE RTA
//