LOCUS AEG54605.1 736 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 1,4-alpha-glucan-branching
enzyme protein.
ACCESSION CP002781-2830
PROTEIN_ID AEG54605.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_2898"
/EC_number="2.4.1.18"
/inference="protein motif:HAMAP:MF_00685"
/note="KEGG: smd:Smed_2740 glycogen branching enzyme;
PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl
hydrolase, family 13, catalytic domain; Alpha-amylase,
C-terminal all beta; TIGRFAM: 1,4-alpha-glucan-branching
enzyme; HAMAP: 1,4-alpha-glucan-branching enzyme; SMART:
Glycosyl hydrolase, family 13, subfamily, catalytic
domain"
/transl_table=11
/db_xref="InterPro:IPR004193"
/db_xref="InterPro:IPR006047"
/db_xref="InterPro:IPR006048"
/db_xref="InterPro:IPR006407"
/db_xref="InterPro:IPR006589"
BEGIN
1 MTVPPGKDPA PAPPGMLPAP EIAAILSGTH SNPFAVLGVH AAGKTYVARC FVPGAETVIA
61 ETLSGKELGT LERRDEAGFF EGPVALRKEQ PIRYRARNDG GEWTVIDPYS FGPVLGPMDD
121 YYIREGSHLR LFDKMGAHPI RHDGAEGFHF AVWAPNARRV SVVGSFNDWD GRRHVMRLRV
181 DTGIWEIFIP GVPVGTPYKY EIVDSNGTLL PLKADPFARR SELRPDTASM TADEIAQNWE
241 DEAHRRHWAE IDPRRQPISI YEVHAASWQR RDNGDMLTWD ELAERLIPYC VDMGFTHIEF
301 LPISEYPYDP SWGYQTTGLY APTARFGEPE GFARFVNGCH KVGIGVILDW VPAHFPTDEH
361 GLRWFDGTAL YEHADPRQGF HPDWNTAIYN FGRQEVVAFL VNNALYWAEK FHVDGLRVDA
421 VASMLYLDYS RKHGEWVPNE YGGNENLEAV RFLQTMNTRI YGIHQGVLTI AEESTSWPKV
481 SHPVHAGGLG FGFKWNMGFM HDTLQYLSRE PVHRKFHHND MTFGLLYAFS ENFVLPLSHD
541 EVVHGKGSLI AKMAGDDWQK FANLRAYYGF MWGYPGKKLL FMGQEFAQWR EWSEDRGLDW
601 NLLEYNLHEG MRRLVRDLNG TYRSKPALHA RDCEGDGFEW LIADDRENSV FAWLRKAPGE
661 KLVAVVTNFT PVYREHYDIP LPVAGRWKEV LNTDAEIYGG SGKGNGGAVH AEKRANGETI
721 ATITLPPLAT LMLEQD
//