LOCUS AEG54573.1 1574 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 Glutamate synthase (ferredoxin)
protein.
ACCESSION CP002781-2798
PROTEIN_ID AEG54573.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_2866"
/EC_number="1.4.7.1"
/inference="protein motif:PRIAM:1.4.7.1"
/note="KEGG: smd:Smed_2711 glutamate synthase
(ferredoxin); PFAM: Glutamine amidotransferase, class-II;
Glutamate synthase, central-N; Glutamate synthase,
central-C; Glutamate synthase, alpha subunit, C-terminal"
/transl_table=11
/db_xref="InterPro:IPR000583"
/db_xref="InterPro:IPR002489"
/db_xref="InterPro:IPR002932"
/db_xref="InterPro:IPR006982"
BEGIN
1 MTDHSPSRQI GLNLAQDAAT AVKTPAFPSG LPRKQGLYDP RNEHDACGVG FVAHLKGEKS
61 HQIVRDGLFM LENLTHRGAV GADPLMGDGA GILVQIPDRF FREEMAKQGV TLPKAGEYAV
121 GYLFMPRDEA LIAHFKEVIS EVVAEEGQIV LGFRDVPVDN SSLSKAPDIA ATEPHHVQVF
181 IGAGREAASS DEFERRLFTL RKVISNRIYA EADGGDLGFY IVSLSTTTIV YKGMFLAYQV
241 GAYYKDLADE RFQSAVALVH QRFSTNTFPS WKLAHPYRMV AHNGEINTLR GNVNWMAARQ
301 ASVSSPLFGD DISKLWPISY EGQSDTACFD NALEFLVRGG YSLSHAVMML IPEAWAGNQL
361 MSPERKAFYE YHAALMEPWD GPAAVAFTDG RQIGATLDRN GLRPARYIVT SDDRVIMASE
421 AGVLPVAEDK IVKKWRLQPG KMLLIDMEEG RIISDEEVKS SLAGKHPYRQ WLDNTQLILE
481 ELKPVEPRAL RRDVSLIDRQ QAFGYTHEDT KLLMSPMATT GQEAIGSMGT DTPISAMSDK
541 PKLLYTYFKQ NFAQVTNPPI DPIREELVMS LVSFIGPRPN ILDHEGMAHA KRLEVRQPIL
601 TNGDLEKIRS IGHTEDRFDT KTLDFTYDIS RGAEGMLEML DRLCERAEAA VKGGYNIIVL
661 SDRQIGPDRV AIPALLATAA VHHHLIRKGL RTSVGLVVES GEPREIHHFC LLAGYGAEAI
721 NPYLAFDTLV DMHKRGEFPK EVDEKEVVYR YIKAVGKGIL KVMSKMGIST YQSYCGAQIF
781 DAVGLSSALV GKYFFGTATT IEGIGLEEIA AETVARHKAA FGSDPVLANT LDIGGEYAFR
841 MRGESHAWTP DAIASLQHAV RGNAEDRYRE FSAMMNESAS RMNTIRGLFT IKGAEEVGRK
901 PIPIEEVEPA AEIVKRFSTG AMSFGSISRE AHTTLAVAMN RIGGKSNTGE GGEESDRYLP
961 LPDGSTNPER SAIKQIASGR FGVTTEYLVN ADVLQIKVAQ GAKPGEGGQL PGHKVDATVA
1021 KTRHSTPGVG LISPPPHHDI YSIEDLAQLI YDLKNVNPEA DVSVKLVSEV GVGTVAAGVA
1081 KARADHITIA GFDGGTGASP LTSLKHAGSP WEIGLAETQQ TLVLNGLRSR IALQVDGGLK
1141 TGRDVVIGAL LGADEFGFAT APLIAAGCIM MRKCHLNTCP VGVATQDPVL RKRFKGTPEH
1201 VVNYFFFVAE EVREILASLG ARRLDDIIGS SDLLDRDRMI EHWKARGLDF SRIFHKVEAP
1261 KEATYWTERQ NHPIDDILDR RLIEKAKLAL ETKVPVAFEA AIKNVDRSAG AMLSGALAKR
1321 WGHKGLKDDT IHVTLKGTAG QSFGAFLARG ITFDLVGDGN DYVGKGLSGG RIIVRPPENA
1381 RIVPHQSIIV GNTVLYGAIS GECYFNGVAG ERFAVRNSGA IAVVEGVGDH GCEYMTGGVV
1441 VVLGGTGRNF AAGMSGGVAY VLDEEGDFAR RCNMAMVELQ PVPEEDDMLE KLHHHGGDLM
1501 HKGMVDVSGD MTRHDEERLY QLISNHLHYT GSVRAKEILD HWADYRPKFR KVMPVEYRRA
1561 LEDMERMKMA EAAE
//